Gene : Glyma.02G181200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR19376:SF11 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1 Genomic Order:  1812
Name:  ? Glyma.02G181200 Secondary Identifier:  ? PAC:30511093
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G181200 0.5kb upstream 0.5kb upstream 17990 true Chr02: 30932075-30950064 Glycine max
Glyma.02G181200 0.5kb upstream 0.5kb upstream 500 false Chr02: 30949565-30950064 Glycine max
Glyma.02G181200 0.5kb downstream 0.5kb downstream 17990 true Chr02: 30931575-30949564 Glycine max
Glyma.02G181200 0.5kb downstream 0.5kb downstream 500 false Chr02: 30931575-30932074 Glycine max
Glyma.02G181200 1.0kb upstream 1.0kb upstream 18490 true Chr02: 30932075-30950564 Glycine max
Glyma.02G181200 1.0kb upstream 1.0kb upstream 1000 false Chr02: 30949565-30950564 Glycine max
Glyma.02G181200 1.0kb downstream 1.0kb downstream 18490 true Chr02: 30931075-30949564 Glycine max
Glyma.02G181200 1.0kb downstream 1.0kb downstream 1000 false Chr02: 30931075-30932074 Glycine max
Glyma.02G181200 2.0kb upstream 2.0kb upstream 19490 true Chr02: 30932075-30951564 Glycine max
Glyma.02G181200 2.0kb upstream 2.0kb upstream 2000 false Chr02: 30949565-30951564 Glycine max
Glyma.02G181200 2.0kb downstream 2.0kb downstream 19490 true Chr02: 30930075-30949564 Glycine max
Glyma.02G181200 2.0kb downstream 2.0kb downstream 2000 false Chr02: 30930075-30932074 Glycine max
Glyma.02G181200 5.0kb upstream 5.0kb upstream 22490 true Chr02: 30932075-30954564 Glycine max
Glyma.02G181200 5.0kb upstream 5.0kb upstream 5000 false Chr02: 30949565-30954564 Glycine max
Glyma.02G181200 5.0kb downstream 5.0kb downstream 22490 true Chr02: 30927075-30949564 Glycine max
Glyma.02G181200 5.0kb downstream 5.0kb downstream 5000 false Chr02: 30927075-30932074 Glycine max
Glyma.02G181200 10.0kb upstream 10.0kb upstream 27490 true Chr02: 30932075-30959564 Glycine max
Glyma.02G181200 10.0kb upstream 10.0kb upstream 10000 false Chr02: 30949565-30959564 Glycine max
Glyma.02G181200 10.0kb downstream 10.0kb downstream 27490 true Chr02: 30922075-30949564 Glycine max
Glyma.02G181200 10.0kb downstream 10.0kb downstream 10000 false Chr02: 30922075-30932074 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308558 5265 Fabidae View MSA
124068682 5270 Rosid View MSA
123740783 5271 Pentapetalae View MSA
122786544 5272 Eudicot View MSA
122045680 5273 Angiosperm View MSA
121344248 5274 Embryophyte View MSA
123424891 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.93676 0.0 8.89655   High
cufflinks 1.06494 0.0 3.46226    
cufflinks 1.32697 0.0 4.00177    
cufflinks 0.516917 0.0 2.06622    
cufflinks 0.568778 0.0 2.24948    
cufflinks 0.164959 0.0 0.801073 Low Low
cufflinks 0.533757 0.0 2.13296    
cufflinks 0.411829 0.0 2.68409    
cufflinks 0.841213 0.0 4.49894    
cufflinks 0.052     Low Low
cufflinks 0.09       Low
cufflinks 0.418       High
cufflinks 0.126        
cufflinks 0.167        
cufflinks 0.258        
cufflinks 0.259        
cufflinks 0.094       Low
cufflinks 0.557       High
cufflinks 0.406       High
cufflinks 0.266        
cufflinks 0.104        
cufflinks 0.331        
cufflinks 0.38        
cufflinks 0.118        
cufflinks 0.278        
cufflinks 0.137        

0 Strain