Gene : Glyma.02G102500 G. max Wm82.a2.v1
Defline:  (1 of 5) PF01936//PF12872 - NYN domain (NYN) // OST-HTH/LOTUS domain (OST-HTH) Genomic Order:  1025
Name:  ? Glyma.02G102500 Secondary Identifier:  ? PAC:30510851
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G102500 0.5kb upstream 0.5kb upstream 3877 true Chr02: 9706107-9709983 Glycine max
Glyma.02G102500 0.5kb upstream 0.5kb upstream 500 false Chr02: 9706107-9706606 Glycine max
Glyma.02G102500 0.5kb downstream 0.5kb downstream 3877 true Chr02: 9706607-9710483 Glycine max
Glyma.02G102500 0.5kb downstream 0.5kb downstream 500 false Chr02: 9709984-9710483 Glycine max
Glyma.02G102500 1.0kb upstream 1.0kb upstream 4377 true Chr02: 9705607-9709983 Glycine max
Glyma.02G102500 1.0kb upstream 1.0kb upstream 1000 false Chr02: 9705607-9706606 Glycine max
Glyma.02G102500 1.0kb downstream 1.0kb downstream 4377 true Chr02: 9706607-9710983 Glycine max
Glyma.02G102500 1.0kb downstream 1.0kb downstream 1000 false Chr02: 9709984-9710983 Glycine max
Glyma.02G102500 2.0kb upstream 2.0kb upstream 5377 true Chr02: 9704607-9709983 Glycine max
Glyma.02G102500 2.0kb upstream 2.0kb upstream 2000 false Chr02: 9704607-9706606 Glycine max
Glyma.02G102500 2.0kb downstream 2.0kb downstream 5377 true Chr02: 9706607-9711983 Glycine max
Glyma.02G102500 2.0kb downstream 2.0kb downstream 2000 false Chr02: 9709984-9711983 Glycine max
Glyma.02G102500 5.0kb upstream 5.0kb upstream 8377 true Chr02: 9701607-9709983 Glycine max
Glyma.02G102500 5.0kb upstream 5.0kb upstream 5000 false Chr02: 9701607-9706606 Glycine max
Glyma.02G102500 5.0kb downstream 5.0kb downstream 8377 true Chr02: 9706607-9714983 Glycine max
Glyma.02G102500 5.0kb downstream 5.0kb downstream 5000 false Chr02: 9709984-9714983 Glycine max
Glyma.02G102500 10.0kb upstream 10.0kb upstream 13377 true Chr02: 9696607-9709983 Glycine max
Glyma.02G102500 10.0kb upstream 10.0kb upstream 10000 false Chr02: 9696607-9706606 Glycine max
Glyma.02G102500 10.0kb downstream 10.0kb downstream 13377 true Chr02: 9706607-9719983 Glycine max
Glyma.02G102500 10.0kb downstream 10.0kb downstream 10000 false Chr02: 9709984-9719983 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306779 5265 Fabidae View MSA
124060923 5270 Rosid View MSA
123747384 5271 Pentapetalae View MSA
122791498 5272 Eudicot View MSA
122044167 5273 Angiosperm View MSA
121346389 5274 Embryophyte View MSA
123380376 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.03676 0.0 21.7929    
cufflinks 7.37148 0.0 20.0894    
cufflinks 10.9911 0.0 29.3919   High
cufflinks 9.49379 0.0 25.5243    
cufflinks 5.98659 0.0 16.5998   Low
cufflinks 10.7717 0.0 28.8426   High
cufflinks 8.39868 0.0 22.7345    
cufflinks 9.37094 0.0 25.2099    
cufflinks 6.28275 0.0 17.3285   Low
cufflinks 11.261     High High
cufflinks 6.367     High  
cufflinks 8.068     High  
cufflinks 5.89        
cufflinks 4.307       Low
cufflinks 2.754       Low
cufflinks 6.256        
cufflinks 9.009     High High
cufflinks 6.97        
cufflinks 5.912        
cufflinks 6.271        
cufflinks 5.034        
cufflinks 6.036        
cufflinks 7.51     High  
cufflinks 5.969        
cufflinks 6.051        
cufflinks 6.906     High  

0 Strain