Gene : Glyma.02G112000 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG1004 - Exosomal 3'-5' exoribonuclease complex subunit Rrp40 Genomic Order:  1120
Name:  ? Glyma.02G112000 Secondary Identifier:  ? PAC:30508860
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.02G112000 0.5kb upstream 0.5kb upstream 6907 true Chr02: 10852455-10859361 Glycine max
Glyma.02G112000 0.5kb upstream 0.5kb upstream 500 false Chr02: 10852455-10852954 Glycine max
Glyma.02G112000 0.5kb downstream 0.5kb downstream 6907 true Chr02: 10852955-10859861 Glycine max
Glyma.02G112000 0.5kb downstream 0.5kb downstream 500 false Chr02: 10859362-10859861 Glycine max
Glyma.02G112000 1.0kb upstream 1.0kb upstream 7407 true Chr02: 10851955-10859361 Glycine max
Glyma.02G112000 1.0kb upstream 1.0kb upstream 1000 false Chr02: 10851955-10852954 Glycine max
Glyma.02G112000 1.0kb downstream 1.0kb downstream 7407 true Chr02: 10852955-10860361 Glycine max
Glyma.02G112000 1.0kb downstream 1.0kb downstream 1000 false Chr02: 10859362-10860361 Glycine max
Glyma.02G112000 2.0kb upstream 2.0kb upstream 8407 true Chr02: 10850955-10859361 Glycine max
Glyma.02G112000 2.0kb upstream 2.0kb upstream 2000 false Chr02: 10850955-10852954 Glycine max
Glyma.02G112000 2.0kb downstream 2.0kb downstream 8407 true Chr02: 10852955-10861361 Glycine max
Glyma.02G112000 2.0kb downstream 2.0kb downstream 2000 false Chr02: 10859362-10861361 Glycine max
Glyma.02G112000 5.0kb upstream 5.0kb upstream 11407 true Chr02: 10847955-10859361 Glycine max
Glyma.02G112000 5.0kb upstream 5.0kb upstream 5000 false Chr02: 10847955-10852954 Glycine max
Glyma.02G112000 5.0kb downstream 5.0kb downstream 11407 true Chr02: 10852955-10864361 Glycine max
Glyma.02G112000 5.0kb downstream 5.0kb downstream 5000 false Chr02: 10859362-10864361 Glycine max
Glyma.02G112000 10.0kb upstream 10.0kb upstream 16407 true Chr02: 10842955-10859361 Glycine max
Glyma.02G112000 10.0kb upstream 10.0kb upstream 10000 false Chr02: 10842955-10852954 Glycine max
Glyma.02G112000 10.0kb downstream 10.0kb downstream 16407 true Chr02: 10852955-10869361 Glycine max
Glyma.02G112000 10.0kb downstream 10.0kb downstream 10000 false Chr02: 10859362-10869361 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301974 5265 Fabidae View MSA
124061201 5270 Rosid View MSA
123736741 5271 Pentapetalae View MSA
122789639 5272 Eudicot View MSA
122045630 5273 Angiosperm View MSA
121344862 5274 Embryophyte View MSA
123428759 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.21195 0.0 32.4189    
cufflinks 6.52953 0.0 24.3839    
cufflinks 3.1678 0.0 15.7814   Low
cufflinks 3.70783 0.0 12.6348   Low
cufflinks 11.3658 0.0 44.4165   High
cufflinks 8.52148 0.0 29.4578    
cufflinks 6.4926 0.0 24.3308    
cufflinks 5.78647 0.0 23.1837    
cufflinks 8.01273 0.0 27.9872    
cufflinks 0.433        
cufflinks 0.127       Low
cufflinks 0.616        
cufflinks 1.759       High
cufflinks 2.714       High
cufflinks 0.144       Low
cufflinks 0.424        
cufflinks 0.25        
cufflinks 0.588        
cufflinks 0.859        
cufflinks 0.236        
cufflinks 0.174        
cufflinks 0.291        
cufflinks 0.673        
cufflinks 0.093       Low
cufflinks 0.427        
cufflinks 0.361        

0 Strain