Gene : Glyma.19G055700 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  557
Name:  ? Glyma.19G055700 Secondary Identifier:  ? PAC:30512935
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G055700 0.5kb upstream 0.5kb upstream 3410 true Chr19: 9352416-9355825 Glycine max
Glyma.19G055700 0.5kb upstream 0.5kb upstream 500 false Chr19: 9352416-9352915 Glycine max
Glyma.19G055700 0.5kb downstream 0.5kb downstream 3410 true Chr19: 9352916-9356325 Glycine max
Glyma.19G055700 0.5kb downstream 0.5kb downstream 500 false Chr19: 9355826-9356325 Glycine max
Glyma.19G055700 1.0kb upstream 1.0kb upstream 3910 true Chr19: 9351916-9355825 Glycine max
Glyma.19G055700 1.0kb upstream 1.0kb upstream 1000 false Chr19: 9351916-9352915 Glycine max
Glyma.19G055700 1.0kb downstream 1.0kb downstream 3910 true Chr19: 9352916-9356825 Glycine max
Glyma.19G055700 1.0kb downstream 1.0kb downstream 1000 false Chr19: 9355826-9356825 Glycine max
Glyma.19G055700 2.0kb upstream 2.0kb upstream 4910 true Chr19: 9350916-9355825 Glycine max
Glyma.19G055700 2.0kb upstream 2.0kb upstream 2000 false Chr19: 9350916-9352915 Glycine max
Glyma.19G055700 2.0kb downstream 2.0kb downstream 4910 true Chr19: 9352916-9357825 Glycine max
Glyma.19G055700 2.0kb downstream 2.0kb downstream 2000 false Chr19: 9355826-9357825 Glycine max
Glyma.19G055700 5.0kb upstream 5.0kb upstream 7910 true Chr19: 9347916-9355825 Glycine max
Glyma.19G055700 5.0kb upstream 5.0kb upstream 5000 false Chr19: 9347916-9352915 Glycine max
Glyma.19G055700 5.0kb downstream 5.0kb downstream 7910 true Chr19: 9352916-9360825 Glycine max
Glyma.19G055700 5.0kb downstream 5.0kb downstream 5000 false Chr19: 9355826-9360825 Glycine max
Glyma.19G055700 10.0kb upstream 10.0kb upstream 12910 true Chr19: 9342916-9355825 Glycine max
Glyma.19G055700 10.0kb upstream 10.0kb upstream 10000 false Chr19: 9342916-9352915 Glycine max
Glyma.19G055700 10.0kb downstream 10.0kb downstream 12910 true Chr19: 9352916-9365825 Glycine max
Glyma.19G055700 10.0kb downstream 10.0kb downstream 10000 false Chr19: 9355826-9365825 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306369 5265 Fabidae View MSA
124062465 5270 Rosid View MSA
123739222 5271 Pentapetalae View MSA
122787096 5272 Eudicot View MSA
122044895 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121350963 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.85079 0.0 5.73613    
cufflinks 1.85436 0.0 5.74526    
cufflinks 0.65296 0.0 2.28915   Low
cufflinks 1.91725 0.0 5.90719    
cufflinks 1.87588 0.0 5.80935    
cufflinks 0.837367 0.0 2.87513   Low
cufflinks 2.56726 0.0 7.60573   High
cufflinks 1.68857 0.0 5.30308    
cufflinks 1.85538 0.0 5.74178    
cufflinks 1.336        
cufflinks 0.237       Low
cufflinks 1.915        
cufflinks 2.225        
cufflinks 2.765       High
cufflinks 0.688        
cufflinks 1.42        
cufflinks 0.617        
cufflinks 2.056        
cufflinks 2.702       High
cufflinks 0.918        
cufflinks 0.189       Low
cufflinks 1.16        
cufflinks 2.243        
cufflinks 0.207       Low
cufflinks 1.369        
cufflinks 0.346       Low

0 Strain