Gene : Glyma.03G046300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11954:SF20 - MACROPHAGE MIGRATION INHIBITORY FACTOR FAMILY PROTEIN Genomic Order:  463
Name:  ? Glyma.03G046300 Secondary Identifier:  ? PAC:30515387
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6498 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G046300 0.5kb upstream 0.5kb upstream 3063 true Chr03: 5909351-5912413 Glycine max
Glyma.03G046300 0.5kb upstream 0.5kb upstream 500 false Chr03: 5909351-5909850 Glycine max
Glyma.03G046300 0.5kb downstream 0.5kb downstream 3063 true Chr03: 5909851-5912913 Glycine max
Glyma.03G046300 0.5kb downstream 0.5kb downstream 500 false Chr03: 5912414-5912913 Glycine max
Glyma.03G046300 1.0kb upstream 1.0kb upstream 3563 true Chr03: 5908851-5912413 Glycine max
Glyma.03G046300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 5908851-5909850 Glycine max
Glyma.03G046300 1.0kb downstream 1.0kb downstream 3563 true Chr03: 5909851-5913413 Glycine max
Glyma.03G046300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 5912414-5913413 Glycine max
Glyma.03G046300 2.0kb upstream 2.0kb upstream 4563 true Chr03: 5907851-5912413 Glycine max
Glyma.03G046300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 5907851-5909850 Glycine max
Glyma.03G046300 2.0kb downstream 2.0kb downstream 4563 true Chr03: 5909851-5914413 Glycine max
Glyma.03G046300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 5912414-5914413 Glycine max
Glyma.03G046300 5.0kb upstream 5.0kb upstream 7563 true Chr03: 5904851-5912413 Glycine max
Glyma.03G046300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 5904851-5909850 Glycine max
Glyma.03G046300 5.0kb downstream 5.0kb downstream 7563 true Chr03: 5909851-5917413 Glycine max
Glyma.03G046300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 5912414-5917413 Glycine max
Glyma.03G046300 10.0kb upstream 10.0kb upstream 12563 true Chr03: 5899851-5912413 Glycine max
Glyma.03G046300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 5899851-5909850 Glycine max
Glyma.03G046300 10.0kb downstream 10.0kb downstream 12563 true Chr03: 5909851-5922413 Glycine max
Glyma.03G046300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 5912414-5922413 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026284 5273 Angiosperm View MSA
122305671 5265 Fabidae View MSA
124069445 5270 Rosid View MSA
123741534 5271 Pentapetalae View MSA
122794012 5272 Eudicot View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 98.1378 0.0 268.105 High  
cufflinks 122.299 0.0 340.853 High  
cufflinks 96.3719 0.0 263.09 High  
cufflinks 38.7318 0.0 103.688 High Low
cufflinks 77.5277 0.0 209.085 High  
cufflinks 216.256 0.0 648.973 High High
cufflinks 66.5613 0.0 178.32 High  
cufflinks 151.992 0.0 434.53 High  
cufflinks 65.5187 0.0 175.535 High  
cufflinks 27.695     High High
cufflinks 5.211       Low
cufflinks 17.187     High  
cufflinks 12.724     High  
cufflinks 9.603     High  
cufflinks 2.083       Low
cufflinks 20.413     High  
cufflinks 16.76     High  
cufflinks 15.002     High  
cufflinks 29.278     High High
cufflinks 20.918     High  
cufflinks 7.735     High  
cufflinks 21.466     High  
cufflinks 24.28     High  
cufflinks 7.133     High  
cufflinks 22.087     High  
cufflinks 14.76     High  

0 Strain