Gene : Glyma.19G047800 G. max Wm82.a2.v1
Defline:  (1 of 5) 5.3.99.9 - Neoxanthin synthase / NSY Genomic Order:  478
Name:  ? Glyma.19G047800 Secondary Identifier:  ? PAC:30512441
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6809 Glycine max pathologic  
Gmax PWY-695 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G047800 0.5kb upstream 0.5kb upstream 5713 true Chr19: 7482456-7488168 Glycine max
Glyma.19G047800 0.5kb upstream 0.5kb upstream 500 false Chr19: 7482456-7482955 Glycine max
Glyma.19G047800 0.5kb downstream 0.5kb downstream 5713 true Chr19: 7482956-7488668 Glycine max
Glyma.19G047800 0.5kb downstream 0.5kb downstream 500 false Chr19: 7488169-7488668 Glycine max
Glyma.19G047800 1.0kb upstream 1.0kb upstream 6213 true Chr19: 7481956-7488168 Glycine max
Glyma.19G047800 1.0kb upstream 1.0kb upstream 1000 false Chr19: 7481956-7482955 Glycine max
Glyma.19G047800 1.0kb downstream 1.0kb downstream 6213 true Chr19: 7482956-7489168 Glycine max
Glyma.19G047800 1.0kb downstream 1.0kb downstream 1000 false Chr19: 7488169-7489168 Glycine max
Glyma.19G047800 2.0kb upstream 2.0kb upstream 7213 true Chr19: 7480956-7488168 Glycine max
Glyma.19G047800 2.0kb upstream 2.0kb upstream 2000 false Chr19: 7480956-7482955 Glycine max
Glyma.19G047800 2.0kb downstream 2.0kb downstream 7213 true Chr19: 7482956-7490168 Glycine max
Glyma.19G047800 2.0kb downstream 2.0kb downstream 2000 false Chr19: 7488169-7490168 Glycine max
Glyma.19G047800 5.0kb upstream 5.0kb upstream 10213 true Chr19: 7477956-7488168 Glycine max
Glyma.19G047800 5.0kb upstream 5.0kb upstream 5000 false Chr19: 7477956-7482955 Glycine max
Glyma.19G047800 5.0kb downstream 5.0kb downstream 10213 true Chr19: 7482956-7493168 Glycine max
Glyma.19G047800 5.0kb downstream 5.0kb downstream 5000 false Chr19: 7488169-7493168 Glycine max
Glyma.19G047800 10.0kb upstream 10.0kb upstream 15213 true Chr19: 7472956-7488168 Glycine max
Glyma.19G047800 10.0kb upstream 10.0kb upstream 10000 false Chr19: 7472956-7482955 Glycine max
Glyma.19G047800 10.0kb downstream 10.0kb downstream 15213 true Chr19: 7482956-7498168 Glycine max
Glyma.19G047800 10.0kb downstream 10.0kb downstream 10000 false Chr19: 7488169-7498168 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312106 5265 Fabidae View MSA
124062178 5270 Rosid View MSA
123748588 5271 Pentapetalae View MSA
122790006 5272 Eudicot View MSA
122047205 5273 Angiosperm View MSA
121346000 5274 Embryophyte View MSA
123425892 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.48808 0.0 20.1566    
cufflinks 3.6975 0.0 21.0374    
cufflinks 63.6469 0.0 263.17 High High
cufflinks 2.94279 0.0 17.6268    
cufflinks 5.73148 0.0 24.9208    
cufflinks 2.25403 0.0 12.5734    
cufflinks 0.285928 0.0 1.11311   Low
cufflinks 22.0131 0.0 85.7151 High  
cufflinks 9.61856 0.0 39.0884    
cufflinks 2.213       High
cufflinks 0.137       Low
cufflinks 2.07       High
cufflinks 0.914        
cufflinks 0.509        
cufflinks 0.509        
cufflinks 0.383        
cufflinks 1.306       High
cufflinks 1.037        
cufflinks 0.499        
cufflinks 0.225        
cufflinks 0.142       Low
cufflinks 0.482        
cufflinks 0.166       Low
cufflinks 0.113       Low
cufflinks 0.264        
cufflinks 0.491        

0 Strain