Gene : Glyma.03G050800 G. max Wm82.a2.v1
Defline:  (1 of 118) PF03514 - GRAS domain family (GRAS) Genomic Order:  508
Name:  ? Glyma.03G050800 Secondary Identifier:  ? PAC:30518633
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G050800 0.5kb upstream 0.5kb upstream 2072 true Chr03: 6623436-6625507 Glycine max
Glyma.03G050800 0.5kb upstream 0.5kb upstream 500 false Chr03: 6625008-6625507 Glycine max
Glyma.03G050800 0.5kb downstream 0.5kb downstream 2072 true Chr03: 6622936-6625007 Glycine max
Glyma.03G050800 0.5kb downstream 0.5kb downstream 500 false Chr03: 6622936-6623435 Glycine max
Glyma.03G050800 1.0kb upstream 1.0kb upstream 2572 true Chr03: 6623436-6626007 Glycine max
Glyma.03G050800 1.0kb upstream 1.0kb upstream 1000 false Chr03: 6625008-6626007 Glycine max
Glyma.03G050800 1.0kb downstream 1.0kb downstream 2572 true Chr03: 6622436-6625007 Glycine max
Glyma.03G050800 1.0kb downstream 1.0kb downstream 1000 false Chr03: 6622436-6623435 Glycine max
Glyma.03G050800 2.0kb upstream 2.0kb upstream 3572 true Chr03: 6623436-6627007 Glycine max
Glyma.03G050800 2.0kb upstream 2.0kb upstream 2000 false Chr03: 6625008-6627007 Glycine max
Glyma.03G050800 2.0kb downstream 2.0kb downstream 3572 true Chr03: 6621436-6625007 Glycine max
Glyma.03G050800 2.0kb downstream 2.0kb downstream 2000 false Chr03: 6621436-6623435 Glycine max
Glyma.03G050800 5.0kb upstream 5.0kb upstream 6572 true Chr03: 6623436-6630007 Glycine max
Glyma.03G050800 5.0kb upstream 5.0kb upstream 5000 false Chr03: 6625008-6630007 Glycine max
Glyma.03G050800 5.0kb downstream 5.0kb downstream 6572 true Chr03: 6618436-6625007 Glycine max
Glyma.03G050800 5.0kb downstream 5.0kb downstream 5000 false Chr03: 6618436-6623435 Glycine max
Glyma.03G050800 10.0kb upstream 10.0kb upstream 11572 true Chr03: 6623436-6635007 Glycine max
Glyma.03G050800 10.0kb upstream 10.0kb upstream 10000 false Chr03: 6625008-6635007 Glycine max
Glyma.03G050800 10.0kb downstream 10.0kb downstream 11572 true Chr03: 6613436-6625007 Glycine max
Glyma.03G050800 10.0kb downstream 10.0kb downstream 10000 false Chr03: 6613436-6623435 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122245213 5265 Fabidae Singleton cluster - no MSA
124075402 5270 Rosid View MSA
123745638 5271 Pentapetalae View MSA
122794932 5272 Eudicot View MSA
122048526 5273 Angiosperm View MSA
121311005 5274 Embryophyte View MSA
123348363 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.148138 0.0 0.580146 Low  
cufflinks 0.129707 0.0 0.510288 Low  
cufflinks 0.351634 0.0 1.32474    
cufflinks 0.0858433 0.0 0.342566 Low  
cufflinks 0.410859 0.0 1.53983   High
cufflinks 0.0749185 0.0 0.300756 Low Low
cufflinks 0.268215 0.0 1.02399    
cufflinks 0.0639898 0.0 0.258139 Low Low
cufflinks 0.461563 0.0 1.7188   High
cufflinks 0.009     Low Low
cufflinks 0.168        
cufflinks 0.129        
cufflinks 0.04     Low Low
cufflinks 0.043     Low  
cufflinks 0.179        
cufflinks 0.419       High
cufflinks 0.063     Low  
cufflinks 0.102     Low  
cufflinks 0.164        
cufflinks 0.595       High
cufflinks 0.134        
cufflinks 0.715       High
cufflinks 0.144        
cufflinks 0.181        
cufflinks 0.508       High
cufflinks 0.04     Low Low

0 Strain