Gene : Glyma.19G087600 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10742:SF229 - PROTOPORPHYRINOGEN OXIDASE 2, CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  876
Name:  ? Glyma.19G087600 Secondary Identifier:  ? PAC:30511614
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CHLOROPHYLL-SYN Glycine max pathologic  
Gmax HEME-BIOSYNTHESIS-II Glycine max pathologic  
Gmax PWY-5918 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G087600 0.5kb upstream 0.5kb upstream 11978 true Chr19: 31165714-31177691 Glycine max
Glyma.19G087600 0.5kb upstream 0.5kb upstream 500 false Chr19: 31165714-31166213 Glycine max
Glyma.19G087600 0.5kb downstream 0.5kb downstream 11978 true Chr19: 31166214-31178191 Glycine max
Glyma.19G087600 0.5kb downstream 0.5kb downstream 500 false Chr19: 31177692-31178191 Glycine max
Glyma.19G087600 1.0kb upstream 1.0kb upstream 12478 true Chr19: 31165214-31177691 Glycine max
Glyma.19G087600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 31165214-31166213 Glycine max
Glyma.19G087600 1.0kb downstream 1.0kb downstream 12478 true Chr19: 31166214-31178691 Glycine max
Glyma.19G087600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 31177692-31178691 Glycine max
Glyma.19G087600 2.0kb upstream 2.0kb upstream 13478 true Chr19: 31164214-31177691 Glycine max
Glyma.19G087600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 31164214-31166213 Glycine max
Glyma.19G087600 2.0kb downstream 2.0kb downstream 13478 true Chr19: 31166214-31179691 Glycine max
Glyma.19G087600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 31177692-31179691 Glycine max
Glyma.19G087600 5.0kb upstream 5.0kb upstream 16478 true Chr19: 31161214-31177691 Glycine max
Glyma.19G087600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 31161214-31166213 Glycine max
Glyma.19G087600 5.0kb downstream 5.0kb downstream 16478 true Chr19: 31166214-31182691 Glycine max
Glyma.19G087600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 31177692-31182691 Glycine max
Glyma.19G087600 10.0kb upstream 10.0kb upstream 21478 true Chr19: 31156214-31177691 Glycine max
Glyma.19G087600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 31156214-31166213 Glycine max
Glyma.19G087600 10.0kb downstream 10.0kb downstream 21478 true Chr19: 31166214-31187691 Glycine max
Glyma.19G087600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 31177692-31187691 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302057 5265 Fabidae View MSA
124068806 5270 Rosid View MSA
123747490 5271 Pentapetalae View MSA
122787686 5272 Eudicot View MSA
122041725 5273 Angiosperm View MSA
121347394 5274 Embryophyte View MSA
123424000 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.2174 0.0 53.6715    
cufflinks 11.5102 0.0 54.9428    
cufflinks 6.20209 0.0 23.1554   Low
cufflinks 9.701 0.0 46.2995    
cufflinks 9.41655 0.0 37.0484    
cufflinks 14.841 0.0 50.2491   High
cufflinks 14.262 0.0 48.4269   High
cufflinks 6.38015 0.0 23.8504   Low
cufflinks 11.5151 0.0 44.1758    
cufflinks 0.358       Low
cufflinks 0.432        
cufflinks 0.444        
cufflinks 0.444        
cufflinks 0.298       Low
cufflinks 0.569        
cufflinks 0.622        
cufflinks 0.332       Low
cufflinks 0.614        
cufflinks 0.572        
cufflinks 0.642       High
cufflinks 0.453        
cufflinks 0.612        
cufflinks 0.606        
cufflinks 0.509        
cufflinks 0.658       High
cufflinks 0.394        

0 Strain