Gene : Glyma.03G219400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR33921:SF2 - CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED Genomic Order:  2194
Name:  ? Glyma.03G219400 Secondary Identifier:  ? PAC:30516263
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G219400 0.5kb upstream 0.5kb upstream 1618 true Chr03: 42292390-42294007 Glycine max
Glyma.03G219400 0.5kb upstream 0.5kb upstream 500 false Chr03: 42293508-42294007 Glycine max
Glyma.03G219400 0.5kb downstream 0.5kb downstream 1618 true Chr03: 42291890-42293507 Glycine max
Glyma.03G219400 0.5kb downstream 0.5kb downstream 500 false Chr03: 42291890-42292389 Glycine max
Glyma.03G219400 1.0kb upstream 1.0kb upstream 2118 true Chr03: 42292390-42294507 Glycine max
Glyma.03G219400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42293508-42294507 Glycine max
Glyma.03G219400 1.0kb downstream 1.0kb downstream 2118 true Chr03: 42291390-42293507 Glycine max
Glyma.03G219400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42291390-42292389 Glycine max
Glyma.03G219400 2.0kb upstream 2.0kb upstream 3118 true Chr03: 42292390-42295507 Glycine max
Glyma.03G219400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42293508-42295507 Glycine max
Glyma.03G219400 2.0kb downstream 2.0kb downstream 3118 true Chr03: 42290390-42293507 Glycine max
Glyma.03G219400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42290390-42292389 Glycine max
Glyma.03G219400 5.0kb upstream 5.0kb upstream 6118 true Chr03: 42292390-42298507 Glycine max
Glyma.03G219400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42293508-42298507 Glycine max
Glyma.03G219400 5.0kb downstream 5.0kb downstream 6118 true Chr03: 42287390-42293507 Glycine max
Glyma.03G219400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42287390-42292389 Glycine max
Glyma.03G219400 10.0kb upstream 10.0kb upstream 11118 true Chr03: 42292390-42303507 Glycine max
Glyma.03G219400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42293508-42303507 Glycine max
Glyma.03G219400 10.0kb downstream 10.0kb downstream 11118 true Chr03: 42282390-42293507 Glycine max
Glyma.03G219400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42282390-42292389 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314753 5265 Fabidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 266.495 0.0 906.516 High High
cufflinks 120.639 0.0 353.694 High  
cufflinks 149.752 0.0 451.702 High  
cufflinks 105.651 0.0 304.731 High  
cufflinks 16.8201 0.0 45.6993   Low
cufflinks 16.4643 0.0 44.8748   Low
cufflinks 132.679 0.0 396.399 High  
cufflinks 92.3233 0.0 261.622 High  
cufflinks 12.0423 0.0 33.6692   Low
cufflinks 44.469     High  
cufflinks 5.282        
cufflinks 59.298     High  
cufflinks 0.222       Low
cufflinks 0.499       Low
cufflinks 11.19     High  
cufflinks 125.53     High High
cufflinks 0.379       Low
cufflinks 44.848     High  
cufflinks 48.736     High  
cufflinks 151.618     High High
cufflinks 2.538        
cufflinks 131.913     High High
cufflinks 83.014     High  
cufflinks 4.287        
cufflinks 141.935     High High
cufflinks 1.28       Low

0 Strain