Gene : Glyma.03G169600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23023:SF83 - INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA5-RELATED Genomic Order:  1696
Name:  ? Glyma.03G169600 Secondary Identifier:  ? PAC:30518684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWYDQC-4 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G169600 0.5kb upstream 0.5kb upstream 2826 true Chr03: 38418620-38421445 Glycine max
Glyma.03G169600 0.5kb upstream 0.5kb upstream 500 false Chr03: 38418620-38419119 Glycine max
Glyma.03G169600 0.5kb downstream 0.5kb downstream 2826 true Chr03: 38419120-38421945 Glycine max
Glyma.03G169600 0.5kb downstream 0.5kb downstream 500 false Chr03: 38421446-38421945 Glycine max
Glyma.03G169600 1.0kb upstream 1.0kb upstream 3326 true Chr03: 38418120-38421445 Glycine max
Glyma.03G169600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 38418120-38419119 Glycine max
Glyma.03G169600 1.0kb downstream 1.0kb downstream 3326 true Chr03: 38419120-38422445 Glycine max
Glyma.03G169600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 38421446-38422445 Glycine max
Glyma.03G169600 2.0kb upstream 2.0kb upstream 4326 true Chr03: 38417120-38421445 Glycine max
Glyma.03G169600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 38417120-38419119 Glycine max
Glyma.03G169600 2.0kb downstream 2.0kb downstream 4326 true Chr03: 38419120-38423445 Glycine max
Glyma.03G169600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 38421446-38423445 Glycine max
Glyma.03G169600 5.0kb upstream 5.0kb upstream 7326 true Chr03: 38414120-38421445 Glycine max
Glyma.03G169600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 38414120-38419119 Glycine max
Glyma.03G169600 5.0kb downstream 5.0kb downstream 7326 true Chr03: 38419120-38426445 Glycine max
Glyma.03G169600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 38421446-38426445 Glycine max
Glyma.03G169600 10.0kb upstream 10.0kb upstream 12326 true Chr03: 38409120-38421445 Glycine max
Glyma.03G169600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 38409120-38419119 Glycine max
Glyma.03G169600 10.0kb downstream 10.0kb downstream 12326 true Chr03: 38419120-38431445 Glycine max
Glyma.03G169600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 38421446-38431445 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300013 5265 Fabidae View MSA
124062448 5270 Rosid View MSA
123751619 5271 Pentapetalae View MSA
122797534 5272 Eudicot View MSA
122049474 5273 Angiosperm View MSA
121351632 5274 Embryophyte View MSA
123426700 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.328821 0.0 1.23573    
cufflinks 0.0222971 0.0 0.0952383 Low Low
cufflinks 0.679403 0.0 2.45823    
cufflinks 0.0185374 0.0 0.0802961 Low Low
cufflinks 2.00116 0.0 6.50483   High
cufflinks 1.01614 0.0 3.56632    
cufflinks 0.0493484 0.0 0.200178 Low  
cufflinks 0.187961 0.0 0.723604 Low  
cufflinks 0.977079 0.0 3.43929    
cufflinks 0.229        
cufflinks 0.589        
cufflinks 0.638        
cufflinks 11.95     High High
cufflinks 2.661       High
cufflinks 0.057       Low
cufflinks 0.472        
cufflinks 0.74        
cufflinks 0.299        
cufflinks 0.017     Low Low
cufflinks 0.101        
cufflinks 0.811        
cufflinks 0.172        
cufflinks 0.016     Low Low
cufflinks 0.193        
cufflinks 0.441        
cufflinks 1.518        

0 Strain