Gene : Glyma.03G164400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12640 - RIBOPHORIN II Genomic Order:  1644
Name:  ? Glyma.03G164400 Secondary Identifier:  ? PAC:30516952
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G164400 0.5kb upstream 0.5kb upstream 8541 true Chr03: 37941432-37949972 Glycine max
Glyma.03G164400 0.5kb upstream 0.5kb upstream 500 false Chr03: 37949473-37949972 Glycine max
Glyma.03G164400 0.5kb downstream 0.5kb downstream 8541 true Chr03: 37940932-37949472 Glycine max
Glyma.03G164400 0.5kb downstream 0.5kb downstream 500 false Chr03: 37940932-37941431 Glycine max
Glyma.03G164400 1.0kb upstream 1.0kb upstream 9041 true Chr03: 37941432-37950472 Glycine max
Glyma.03G164400 1.0kb upstream 1.0kb upstream 1000 false Chr03: 37949473-37950472 Glycine max
Glyma.03G164400 1.0kb downstream 1.0kb downstream 9041 true Chr03: 37940432-37949472 Glycine max
Glyma.03G164400 1.0kb downstream 1.0kb downstream 1000 false Chr03: 37940432-37941431 Glycine max
Glyma.03G164400 2.0kb upstream 2.0kb upstream 10041 true Chr03: 37941432-37951472 Glycine max
Glyma.03G164400 2.0kb upstream 2.0kb upstream 2000 false Chr03: 37949473-37951472 Glycine max
Glyma.03G164400 2.0kb downstream 2.0kb downstream 10041 true Chr03: 37939432-37949472 Glycine max
Glyma.03G164400 2.0kb downstream 2.0kb downstream 2000 false Chr03: 37939432-37941431 Glycine max
Glyma.03G164400 5.0kb upstream 5.0kb upstream 13041 true Chr03: 37941432-37954472 Glycine max
Glyma.03G164400 5.0kb upstream 5.0kb upstream 5000 false Chr03: 37949473-37954472 Glycine max
Glyma.03G164400 5.0kb downstream 5.0kb downstream 13041 true Chr03: 37936432-37949472 Glycine max
Glyma.03G164400 5.0kb downstream 5.0kb downstream 5000 false Chr03: 37936432-37941431 Glycine max
Glyma.03G164400 10.0kb upstream 10.0kb upstream 18041 true Chr03: 37941432-37959472 Glycine max
Glyma.03G164400 10.0kb upstream 10.0kb upstream 10000 false Chr03: 37949473-37959472 Glycine max
Glyma.03G164400 10.0kb downstream 10.0kb downstream 18041 true Chr03: 37931432-37949472 Glycine max
Glyma.03G164400 10.0kb downstream 10.0kb downstream 10000 false Chr03: 37931432-37941431 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041028 5273 Angiosperm View MSA
122310826 5265 Fabidae View MSA
124066748 5270 Rosid View MSA
123737285 5271 Pentapetalae View MSA
122787550 5272 Eudicot View MSA
121344151 5274 Embryophyte View MSA
123379986 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.5733 0.0 116.174 High High
cufflinks 20.3687 0.0 71.9689 High  
cufflinks 11.2866 0.0 38.3567   Low
cufflinks 27.2181 0.0 101.13 High  
cufflinks 27.9361 0.0 89.6439 High  
cufflinks 17.7258 0.0 53.461    
cufflinks 27.6758 0.0 102.61 High  
cufflinks 17.976 0.0 69.6287    
cufflinks 19.7533 0.0 69.4262 High  
cufflinks 3.307        
cufflinks 0.386       Low
cufflinks 2.464        
cufflinks 4.037       High
cufflinks 4.884       High
cufflinks 0.553       Low
cufflinks 2.573        
cufflinks 1.588        
cufflinks 3.323        
cufflinks 4.048       High
cufflinks 2.033        
cufflinks 0.77       Low
cufflinks 2.552        
cufflinks 3.228        
cufflinks 0.94        
cufflinks 1.737        
cufflinks 1.059        

0 Strain