Gene : Glyma.03G202600 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  2026
Name:  ? Glyma.03G202600 Secondary Identifier:  ? PAC:30519025
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G202600 0.5kb upstream 0.5kb upstream 2095 true Chr03: 41096662-41098756 Glycine max
Glyma.03G202600 0.5kb upstream 0.5kb upstream 500 false Chr03: 41096662-41097161 Glycine max
Glyma.03G202600 0.5kb downstream 0.5kb downstream 2095 true Chr03: 41097162-41099256 Glycine max
Glyma.03G202600 0.5kb downstream 0.5kb downstream 500 false Chr03: 41098757-41099256 Glycine max
Glyma.03G202600 1.0kb upstream 1.0kb upstream 2595 true Chr03: 41096162-41098756 Glycine max
Glyma.03G202600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 41096162-41097161 Glycine max
Glyma.03G202600 1.0kb downstream 1.0kb downstream 2595 true Chr03: 41097162-41099756 Glycine max
Glyma.03G202600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 41098757-41099756 Glycine max
Glyma.03G202600 2.0kb upstream 2.0kb upstream 3595 true Chr03: 41095162-41098756 Glycine max
Glyma.03G202600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 41095162-41097161 Glycine max
Glyma.03G202600 2.0kb downstream 2.0kb downstream 3595 true Chr03: 41097162-41100756 Glycine max
Glyma.03G202600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 41098757-41100756 Glycine max
Glyma.03G202600 5.0kb upstream 5.0kb upstream 6595 true Chr03: 41092162-41098756 Glycine max
Glyma.03G202600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 41092162-41097161 Glycine max
Glyma.03G202600 5.0kb downstream 5.0kb downstream 6595 true Chr03: 41097162-41103756 Glycine max
Glyma.03G202600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 41098757-41103756 Glycine max
Glyma.03G202600 10.0kb upstream 10.0kb upstream 11595 true Chr03: 41087162-41098756 Glycine max
Glyma.03G202600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 41087162-41097161 Glycine max
Glyma.03G202600 10.0kb downstream 10.0kb downstream 11595 true Chr03: 41097162-41108756 Glycine max
Glyma.03G202600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 41098757-41108756 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314147 5265 Fabidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.964 0.0 55.9435   High
cufflinks 0.0127635 0.0 0.0578826 Low Low
cufflinks 0.737735 0.0 2.67827    
cufflinks 0.00710577 0.0 0.0341648 Low Low
cufflinks 0.653281 0.0 2.38938    
cufflinks 15.4982 0.0 41.4593   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0383249 0.0 0.158712 Low  
cufflinks 0.380173 0.0 1.42828    
cufflinks 34.126     High  
cufflinks 60.118     High  
cufflinks 13.438     High  
cufflinks 9.618     High  
cufflinks 1.427       Low
cufflinks 26.223     High  
cufflinks 16.578     High  
cufflinks 536.497     High High
cufflinks 6.942        
cufflinks 0.605       Low
cufflinks 10.609     High  
cufflinks 61.541     High  
cufflinks 8.818     High  
cufflinks 9.094     High  
cufflinks 81.218     High  
cufflinks 3.39        
cufflinks 156.541     High High

0 Strain