Gene : Glyma.19G131700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Genomic Order:  1317
Name:  ? Glyma.19G131700 Secondary Identifier:  ? PAC:30512485
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G131700 0.5kb upstream 0.5kb upstream 4538 true Chr19: 39220443-39224980 Glycine max
Glyma.19G131700 0.5kb upstream 0.5kb upstream 500 false Chr19: 39224481-39224980 Glycine max
Glyma.19G131700 0.5kb downstream 0.5kb downstream 4538 true Chr19: 39219943-39224480 Glycine max
Glyma.19G131700 0.5kb downstream 0.5kb downstream 500 false Chr19: 39219943-39220442 Glycine max
Glyma.19G131700 1.0kb upstream 1.0kb upstream 5038 true Chr19: 39220443-39225480 Glycine max
Glyma.19G131700 1.0kb upstream 1.0kb upstream 1000 false Chr19: 39224481-39225480 Glycine max
Glyma.19G131700 1.0kb downstream 1.0kb downstream 5038 true Chr19: 39219443-39224480 Glycine max
Glyma.19G131700 1.0kb downstream 1.0kb downstream 1000 false Chr19: 39219443-39220442 Glycine max
Glyma.19G131700 2.0kb upstream 2.0kb upstream 6038 true Chr19: 39220443-39226480 Glycine max
Glyma.19G131700 2.0kb upstream 2.0kb upstream 2000 false Chr19: 39224481-39226480 Glycine max
Glyma.19G131700 2.0kb downstream 2.0kb downstream 6038 true Chr19: 39218443-39224480 Glycine max
Glyma.19G131700 2.0kb downstream 2.0kb downstream 2000 false Chr19: 39218443-39220442 Glycine max
Glyma.19G131700 5.0kb upstream 5.0kb upstream 9038 true Chr19: 39220443-39229480 Glycine max
Glyma.19G131700 5.0kb upstream 5.0kb upstream 5000 false Chr19: 39224481-39229480 Glycine max
Glyma.19G131700 5.0kb downstream 5.0kb downstream 9038 true Chr19: 39215443-39224480 Glycine max
Glyma.19G131700 5.0kb downstream 5.0kb downstream 5000 false Chr19: 39215443-39220442 Glycine max
Glyma.19G131700 10.0kb upstream 10.0kb upstream 14038 true Chr19: 39220443-39234480 Glycine max
Glyma.19G131700 10.0kb upstream 10.0kb upstream 10000 false Chr19: 39224481-39234480 Glycine max
Glyma.19G131700 10.0kb downstream 10.0kb downstream 14038 true Chr19: 39210443-39224480 Glycine max
Glyma.19G131700 10.0kb downstream 10.0kb downstream 10000 false Chr19: 39210443-39220442 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302329 5265 Fabidae View MSA
124067082 5270 Rosid View MSA
123741650 5271 Pentapetalae View MSA
122792617 5272 Eudicot View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.22777 0.0 11.5546    
cufflinks 2.2442 0.0 8.20502   Low
cufflinks 2.98599 0.0 10.7164    
cufflinks 2.55012 0.0 9.24377    
cufflinks 2.99528 0.0 10.7349    
cufflinks 4.12446 0.0 14.4755   High
cufflinks 4.83361 0.0 16.7   High
cufflinks 2.57116 0.0 9.30593    
cufflinks 2.93333 0.0 10.5338    
cufflinks 0.499       Low
cufflinks 0.914        
cufflinks 1.098        
cufflinks 1.086        
cufflinks 1.24        
cufflinks 0.757        
cufflinks 1.412        
cufflinks 0.515       Low
cufflinks 1.342        
cufflinks 1.276        
cufflinks 1.517       High
cufflinks 1.006        
cufflinks 1.534       High
cufflinks 0.961        
cufflinks 1.273        
cufflinks 1.497       High
cufflinks 0.752        

0 Strain