Gene : Glyma.04G171800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24064:SF242 - ORGANIC CATION/CARNITINE TRANSPORTER 3 Genomic Order:  1718
Name:  ? Glyma.04G171800 Secondary Identifier:  ? PAC:30490152
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G171800 0.5kb upstream 0.5kb upstream 1656 true Chr04: 42883858-42885513 Glycine max
Glyma.04G171800 0.5kb upstream 0.5kb upstream 500 false Chr04: 42885014-42885513 Glycine max
Glyma.04G171800 0.5kb downstream 0.5kb downstream 1656 true Chr04: 42883358-42885013 Glycine max
Glyma.04G171800 0.5kb downstream 0.5kb downstream 500 false Chr04: 42883358-42883857 Glycine max
Glyma.04G171800 1.0kb upstream 1.0kb upstream 2156 true Chr04: 42883858-42886013 Glycine max
Glyma.04G171800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 42885014-42886013 Glycine max
Glyma.04G171800 1.0kb downstream 1.0kb downstream 2156 true Chr04: 42882858-42885013 Glycine max
Glyma.04G171800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 42882858-42883857 Glycine max
Glyma.04G171800 2.0kb upstream 2.0kb upstream 3156 true Chr04: 42883858-42887013 Glycine max
Glyma.04G171800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 42885014-42887013 Glycine max
Glyma.04G171800 2.0kb downstream 2.0kb downstream 3156 true Chr04: 42881858-42885013 Glycine max
Glyma.04G171800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 42881858-42883857 Glycine max
Glyma.04G171800 5.0kb upstream 5.0kb upstream 6156 true Chr04: 42883858-42890013 Glycine max
Glyma.04G171800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 42885014-42890013 Glycine max
Glyma.04G171800 5.0kb downstream 5.0kb downstream 6156 true Chr04: 42878858-42885013 Glycine max
Glyma.04G171800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 42878858-42883857 Glycine max
Glyma.04G171800 10.0kb upstream 10.0kb upstream 11156 true Chr04: 42883858-42895013 Glycine max
Glyma.04G171800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 42885014-42895013 Glycine max
Glyma.04G171800 10.0kb downstream 10.0kb downstream 11156 true Chr04: 42873858-42885013 Glycine max
Glyma.04G171800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 42873858-42883857 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122248800 5265 Fabidae Singleton cluster - no MSA
124063711 5270 Rosid View MSA
123752944 5271 Pentapetalae View MSA
122793409 5272 Eudicot View MSA
122049028 5273 Angiosperm View MSA
123429172 5275 Viridiplantae View MSA
121351070 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0414767 0.0 0.176752 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0130881 0.0 0.0619229 Low Low
cufflinks 0.829171 0.0 3.06595    
cufflinks 15.2621 0.0 41.6704    
cufflinks 5.16222 0.0 15.9849    
cufflinks 24.6098 0.0 65.7851 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.84953 0.0 12.4221    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.952     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 14.785     High  
cufflinks 18.472     High  
cufflinks 4.929        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.543        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 34.653     High  
cufflinks 0.013     Low Low
cufflinks 0.016     Low Low
cufflinks 3.051        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 20.45     High  

0 Strain