Gene : Glyma.04G001600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11777:SF14 - ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED Genomic Order:  16
Name:  ? Glyma.04G001600 Secondary Identifier:  ? PAC:30487173
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G001600 0.5kb upstream 0.5kb upstream 7222 true Chr04: 131966-139187 Glycine max
Glyma.04G001600 0.5kb upstream 0.5kb upstream 500 false Chr04: 138688-139187 Glycine max
Glyma.04G001600 0.5kb downstream 0.5kb downstream 7222 true Chr04: 131466-138687 Glycine max
Glyma.04G001600 0.5kb downstream 0.5kb downstream 500 false Chr04: 131466-131965 Glycine max
Glyma.04G001600 1.0kb upstream 1.0kb upstream 7722 true Chr04: 131966-139687 Glycine max
Glyma.04G001600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 138688-139687 Glycine max
Glyma.04G001600 1.0kb downstream 1.0kb downstream 7722 true Chr04: 130966-138687 Glycine max
Glyma.04G001600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 130966-131965 Glycine max
Glyma.04G001600 2.0kb upstream 2.0kb upstream 8722 true Chr04: 131966-140687 Glycine max
Glyma.04G001600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 138688-140687 Glycine max
Glyma.04G001600 2.0kb downstream 2.0kb downstream 8722 true Chr04: 129966-138687 Glycine max
Glyma.04G001600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 129966-131965 Glycine max
Glyma.04G001600 5.0kb upstream 5.0kb upstream 11722 true Chr04: 131966-143687 Glycine max
Glyma.04G001600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 138688-143687 Glycine max
Glyma.04G001600 5.0kb downstream 5.0kb downstream 11722 true Chr04: 126966-138687 Glycine max
Glyma.04G001600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 126966-131965 Glycine max
Glyma.04G001600 10.0kb upstream 10.0kb upstream 16722 true Chr04: 131966-148687 Glycine max
Glyma.04G001600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 138688-148687 Glycine max
Glyma.04G001600 10.0kb downstream 10.0kb downstream 16722 true Chr04: 121966-138687 Glycine max
Glyma.04G001600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 121966-131965 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309054 5265 Fabidae View MSA
124064161 5270 Rosid View MSA
123740814 5271 Pentapetalae View MSA
122788872 5272 Eudicot View MSA
122048095 5273 Angiosperm View MSA
121348703 5274 Embryophyte View MSA
123425032 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.8869 0.0 27.1959   High
cufflinks 3.67381 0.0 13.9791    
cufflinks 2.59064 0.0 10.1417    
cufflinks 2.61067 0.0 11.4889    
cufflinks 0.792353 0.0 3.87779   Low
cufflinks 1.23841 0.0 6.1681    
cufflinks 2.50563 0.0 11.1787    
cufflinks 1.57179 0.0 7.28987    
cufflinks 1.16451 0.0 6.15792    
cufflinks 0.279        
cufflinks 0.275        
cufflinks 0.629        
cufflinks 0.101       Low
cufflinks 0.072     Low Low
cufflinks 0.184        
cufflinks 1.962       High
cufflinks 0.105       Low
cufflinks 0.67        
cufflinks 0.69        
cufflinks 2.667       High
cufflinks 0.185        
cufflinks 2.484       High
cufflinks 1.659       High
cufflinks 0.253        
cufflinks 2.371       High
cufflinks 0.101       Low

0 Strain