Gene : Glyma.04G044400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR19957//PTHR19957:SF118 - SYNTAXIN Genomic Order:  444
Name:  ? Glyma.04G044400 Secondary Identifier:  ? PAC:30488765
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G044400 0.5kb upstream 0.5kb upstream 3492 true Chr04: 3549376-3552867 Glycine max
Glyma.04G044400 0.5kb upstream 0.5kb upstream 500 false Chr04: 3552368-3552867 Glycine max
Glyma.04G044400 0.5kb downstream 0.5kb downstream 3492 true Chr04: 3548876-3552367 Glycine max
Glyma.04G044400 0.5kb downstream 0.5kb downstream 500 false Chr04: 3548876-3549375 Glycine max
Glyma.04G044400 1.0kb upstream 1.0kb upstream 3992 true Chr04: 3549376-3553367 Glycine max
Glyma.04G044400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 3552368-3553367 Glycine max
Glyma.04G044400 1.0kb downstream 1.0kb downstream 3992 true Chr04: 3548376-3552367 Glycine max
Glyma.04G044400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 3548376-3549375 Glycine max
Glyma.04G044400 2.0kb upstream 2.0kb upstream 4992 true Chr04: 3549376-3554367 Glycine max
Glyma.04G044400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 3552368-3554367 Glycine max
Glyma.04G044400 2.0kb downstream 2.0kb downstream 4992 true Chr04: 3547376-3552367 Glycine max
Glyma.04G044400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 3547376-3549375 Glycine max
Glyma.04G044400 5.0kb upstream 5.0kb upstream 7992 true Chr04: 3549376-3557367 Glycine max
Glyma.04G044400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 3552368-3557367 Glycine max
Glyma.04G044400 5.0kb downstream 5.0kb downstream 7992 true Chr04: 3544376-3552367 Glycine max
Glyma.04G044400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 3544376-3549375 Glycine max
Glyma.04G044400 10.0kb upstream 10.0kb upstream 12992 true Chr04: 3549376-3562367 Glycine max
Glyma.04G044400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 3552368-3562367 Glycine max
Glyma.04G044400 10.0kb downstream 10.0kb downstream 12992 true Chr04: 3539376-3552367 Glycine max
Glyma.04G044400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 3539376-3549375 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309285 5265 Fabidae View MSA
124064346 5270 Rosid View MSA
123743910 5271 Pentapetalae View MSA
122788324 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.88126 0.0 23.1221    
cufflinks 7.06636 0.0 24.8689    
cufflinks 9.47528 0.0 28.7541   High
cufflinks 8.49544 0.0 28.0848    
cufflinks 6.85839 0.0 25.7258    
cufflinks 9.07354 0.0 28.0436   High
cufflinks 5.91371 0.0 26.7423   Low
cufflinks 8.33537 0.0 26.1735    
cufflinks 6.33281 0.0 21.6515   Low
cufflinks 5.008        
cufflinks 5.476        
cufflinks 6.441       High
cufflinks 4.485        
cufflinks 4.275        
cufflinks 3.744       Low
cufflinks 4.763        
cufflinks 5.643        
cufflinks 6.52       High
cufflinks 5.462        
cufflinks 4.496        
cufflinks 4.15       Low
cufflinks 4.396        
cufflinks 4.302        
cufflinks 5.355        
cufflinks 4.655        
cufflinks 5.599        

0 Strain