Gene : Glyma.04G080000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11134:SF4 - AP-4 COMPLEX SUBUNIT BETA-1 Genomic Order:  800
Name:  ? Glyma.04G080000 Secondary Identifier:  ? PAC:30489024
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G080000 0.5kb upstream 0.5kb upstream 9632 true Chr04: 6724079-6733710 Glycine max
Glyma.04G080000 0.5kb upstream 0.5kb upstream 500 false Chr04: 6724079-6724578 Glycine max
Glyma.04G080000 0.5kb downstream 0.5kb downstream 9632 true Chr04: 6724579-6734210 Glycine max
Glyma.04G080000 0.5kb downstream 0.5kb downstream 500 false Chr04: 6733711-6734210 Glycine max
Glyma.04G080000 1.0kb upstream 1.0kb upstream 10132 true Chr04: 6723579-6733710 Glycine max
Glyma.04G080000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 6723579-6724578 Glycine max
Glyma.04G080000 1.0kb downstream 1.0kb downstream 10132 true Chr04: 6724579-6734710 Glycine max
Glyma.04G080000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 6733711-6734710 Glycine max
Glyma.04G080000 2.0kb upstream 2.0kb upstream 11132 true Chr04: 6722579-6733710 Glycine max
Glyma.04G080000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 6722579-6724578 Glycine max
Glyma.04G080000 2.0kb downstream 2.0kb downstream 11132 true Chr04: 6724579-6735710 Glycine max
Glyma.04G080000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 6733711-6735710 Glycine max
Glyma.04G080000 5.0kb upstream 5.0kb upstream 14132 true Chr04: 6719579-6733710 Glycine max
Glyma.04G080000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 6719579-6724578 Glycine max
Glyma.04G080000 5.0kb downstream 5.0kb downstream 14132 true Chr04: 6724579-6738710 Glycine max
Glyma.04G080000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 6733711-6738710 Glycine max
Glyma.04G080000 10.0kb upstream 10.0kb upstream 19132 true Chr04: 6714579-6733710 Glycine max
Glyma.04G080000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 6714579-6724578 Glycine max
Glyma.04G080000 10.0kb downstream 10.0kb downstream 19132 true Chr04: 6724579-6743710 Glycine max
Glyma.04G080000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 6733711-6743710 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040917 5273 Angiosperm View MSA
122300849 5265 Fabidae View MSA
124062984 5270 Rosid View MSA
123740433 5271 Pentapetalae View MSA
122790083 5272 Eudicot View MSA
121346542 5274 Embryophyte View MSA
123428647 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.70117 0.0 20.6046    
cufflinks 7.63675 0.0 20.4306    
cufflinks 6.284 0.0 16.8973   Low
cufflinks 11.7708 0.0 31.4693    
cufflinks 10.3299 0.0 27.5623    
cufflinks 9.19033 0.0 24.5216    
cufflinks 17.613 0.0 47.8052   High
cufflinks 8.2879 0.0 22.1365    
cufflinks 7.80106 0.0 20.8606    
cufflinks 4.314       High
cufflinks 1.239       Low
cufflinks 3.005        
cufflinks 4.035       High
cufflinks 4.753       High
cufflinks 1.547       Low
cufflinks 2.251        
cufflinks 1.944        
cufflinks 4.017       High
cufflinks 3.826       High
cufflinks 1.909        
cufflinks 1.976        
cufflinks 2.043        
cufflinks 3.079        
cufflinks 1.77        
cufflinks 2.018        
cufflinks 1.807        

0 Strain