Gene : Glyma.19G120600 G. max Wm82.a2.v1
Defline:  (1 of 5) 2.3.3.13//2.3.3.14 - 2-isopropylmalate synthase / Isopropylmalate synthetase // Homocitrate synthase / Homocitrate synthetase Genomic Order:  1206
Name:  ? Glyma.19G120600 Secondary Identifier:  ? PAC:30513180
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BRANCHED-CHAIN-AA-SYN-PWY Glycine max pathologic  
Gmax LEUSYN-PWY Glycine max pathologic  

Genomics

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Expression

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Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G120600 0.5kb upstream 0.5kb upstream 11279 true Chr19: 37841607-37852885 Glycine max
Glyma.19G120600 0.5kb upstream 0.5kb upstream 500 false Chr19: 37841607-37842106 Glycine max
Glyma.19G120600 0.5kb downstream 0.5kb downstream 11279 true Chr19: 37842107-37853385 Glycine max
Glyma.19G120600 0.5kb downstream 0.5kb downstream 500 false Chr19: 37852886-37853385 Glycine max
Glyma.19G120600 1.0kb upstream 1.0kb upstream 11779 true Chr19: 37841107-37852885 Glycine max
Glyma.19G120600 1.0kb upstream 1.0kb upstream 1000 false Chr19: 37841107-37842106 Glycine max
Glyma.19G120600 1.0kb downstream 1.0kb downstream 11779 true Chr19: 37842107-37853885 Glycine max
Glyma.19G120600 1.0kb downstream 1.0kb downstream 1000 false Chr19: 37852886-37853885 Glycine max
Glyma.19G120600 2.0kb upstream 2.0kb upstream 12779 true Chr19: 37840107-37852885 Glycine max
Glyma.19G120600 2.0kb upstream 2.0kb upstream 2000 false Chr19: 37840107-37842106 Glycine max
Glyma.19G120600 2.0kb downstream 2.0kb downstream 12779 true Chr19: 37842107-37854885 Glycine max
Glyma.19G120600 2.0kb downstream 2.0kb downstream 2000 false Chr19: 37852886-37854885 Glycine max
Glyma.19G120600 5.0kb upstream 5.0kb upstream 15779 true Chr19: 37837107-37852885 Glycine max
Glyma.19G120600 5.0kb upstream 5.0kb upstream 5000 false Chr19: 37837107-37842106 Glycine max
Glyma.19G120600 5.0kb downstream 5.0kb downstream 15779 true Chr19: 37842107-37857885 Glycine max
Glyma.19G120600 5.0kb downstream 5.0kb downstream 5000 false Chr19: 37852886-37857885 Glycine max
Glyma.19G120600 10.0kb upstream 10.0kb upstream 20779 true Chr19: 37832107-37852885 Glycine max
Glyma.19G120600 10.0kb upstream 10.0kb upstream 10000 false Chr19: 37832107-37842106 Glycine max
Glyma.19G120600 10.0kb downstream 10.0kb downstream 20779 true Chr19: 37842107-37862885 Glycine max
Glyma.19G120600 10.0kb downstream 10.0kb downstream 10000 false Chr19: 37852886-37862885 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122250492 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 31.424 0.0 85.247 High High
cufflinks 0.0526399 0.0 0.2134 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.165454 0.0 0.642787 Low  
cufflinks 0.983411 0.0 3.48231    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.30731 0.0 4.51173    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 5.625       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.478        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 5.546       High
cufflinks 0.175        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.237        
cufflinks 0.742        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.244        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain