Gene : Glyma.03G238000 G. max Wm82.a2.v1
Defline:  (1 of 113) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  2380
Name:  ? Glyma.03G238000 Secondary Identifier:  ? PAC:30515863
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G238000 0.5kb upstream 0.5kb upstream 2402 true Chr03: 43763756-43766157 Glycine max
Glyma.03G238000 0.5kb upstream 0.5kb upstream 500 false Chr03: 43765658-43766157 Glycine max
Glyma.03G238000 0.5kb downstream 0.5kb downstream 2402 true Chr03: 43763256-43765657 Glycine max
Glyma.03G238000 0.5kb downstream 0.5kb downstream 500 false Chr03: 43763256-43763755 Glycine max
Glyma.03G238000 1.0kb upstream 1.0kb upstream 2902 true Chr03: 43763756-43766657 Glycine max
Glyma.03G238000 1.0kb upstream 1.0kb upstream 1000 false Chr03: 43765658-43766657 Glycine max
Glyma.03G238000 1.0kb downstream 1.0kb downstream 2902 true Chr03: 43762756-43765657 Glycine max
Glyma.03G238000 1.0kb downstream 1.0kb downstream 1000 false Chr03: 43762756-43763755 Glycine max
Glyma.03G238000 2.0kb upstream 2.0kb upstream 3902 true Chr03: 43763756-43767657 Glycine max
Glyma.03G238000 2.0kb upstream 2.0kb upstream 2000 false Chr03: 43765658-43767657 Glycine max
Glyma.03G238000 2.0kb downstream 2.0kb downstream 3902 true Chr03: 43761756-43765657 Glycine max
Glyma.03G238000 2.0kb downstream 2.0kb downstream 2000 false Chr03: 43761756-43763755 Glycine max
Glyma.03G238000 5.0kb upstream 5.0kb upstream 6902 true Chr03: 43763756-43770657 Glycine max
Glyma.03G238000 5.0kb upstream 5.0kb upstream 5000 false Chr03: 43765658-43770657 Glycine max
Glyma.03G238000 5.0kb downstream 5.0kb downstream 6902 true Chr03: 43758756-43765657 Glycine max
Glyma.03G238000 5.0kb downstream 5.0kb downstream 5000 false Chr03: 43758756-43763755 Glycine max
Glyma.03G238000 10.0kb upstream 10.0kb upstream 11902 true Chr03: 43763756-43775657 Glycine max
Glyma.03G238000 10.0kb upstream 10.0kb upstream 10000 false Chr03: 43765658-43775657 Glycine max
Glyma.03G238000 10.0kb downstream 10.0kb downstream 11902 true Chr03: 43753756-43765657 Glycine max
Glyma.03G238000 10.0kb downstream 10.0kb downstream 10000 false Chr03: 43753756-43763755 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310588 5265 Fabidae View MSA
124066488 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.99473 0.0 6.49003   High
cufflinks 1.37026 0.0 4.6715    
cufflinks 0.798258 0.0 2.8429   Low
cufflinks 1.2465 0.0 4.29224    
cufflinks 1.58387 0.0 5.3222    
cufflinks 0.690089 0.0 2.48981   Low
cufflinks 1.31341 0.0 4.51254    
cufflinks 1.43914 0.0 4.88141    
cufflinks 1.39904 0.0 4.75882    
cufflinks 1.382        
cufflinks 0.769       Low
cufflinks 1.763        
cufflinks 2.237       High
cufflinks 3.419       High
cufflinks 0.841        
cufflinks 1.325        
cufflinks 1.226        
cufflinks 1.586        
cufflinks 2.634       High
cufflinks 1.379        
cufflinks 0.517       Low
cufflinks 1.274        
cufflinks 2.173        
cufflinks 0.731       Low
cufflinks 1.249        
cufflinks 0.82        

0 Strain