Gene : Glyma.03G222500 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31375:SF43 - GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN Genomic Order:  2225
Name:  ? Glyma.03G222500 Secondary Identifier:  ? PAC:30519326
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.03G222500 0.5kb upstream 0.5kb upstream 3881 true Chr03: 42538695-42542575 Glycine max
Glyma.03G222500 0.5kb upstream 0.5kb upstream 500 false Chr03: 42542076-42542575 Glycine max
Glyma.03G222500 0.5kb downstream 0.5kb downstream 3881 true Chr03: 42538195-42542075 Glycine max
Glyma.03G222500 0.5kb downstream 0.5kb downstream 500 false Chr03: 42538195-42538694 Glycine max
Glyma.03G222500 1.0kb upstream 1.0kb upstream 4381 true Chr03: 42538695-42543075 Glycine max
Glyma.03G222500 1.0kb upstream 1.0kb upstream 1000 false Chr03: 42542076-42543075 Glycine max
Glyma.03G222500 1.0kb downstream 1.0kb downstream 4381 true Chr03: 42537695-42542075 Glycine max
Glyma.03G222500 1.0kb downstream 1.0kb downstream 1000 false Chr03: 42537695-42538694 Glycine max
Glyma.03G222500 2.0kb upstream 2.0kb upstream 5381 true Chr03: 42538695-42544075 Glycine max
Glyma.03G222500 2.0kb upstream 2.0kb upstream 2000 false Chr03: 42542076-42544075 Glycine max
Glyma.03G222500 2.0kb downstream 2.0kb downstream 5381 true Chr03: 42536695-42542075 Glycine max
Glyma.03G222500 2.0kb downstream 2.0kb downstream 2000 false Chr03: 42536695-42538694 Glycine max
Glyma.03G222500 5.0kb upstream 5.0kb upstream 8381 true Chr03: 42538695-42547075 Glycine max
Glyma.03G222500 5.0kb upstream 5.0kb upstream 5000 false Chr03: 42542076-42547075 Glycine max
Glyma.03G222500 5.0kb downstream 5.0kb downstream 8381 true Chr03: 42533695-42542075 Glycine max
Glyma.03G222500 5.0kb downstream 5.0kb downstream 5000 false Chr03: 42533695-42538694 Glycine max
Glyma.03G222500 10.0kb upstream 10.0kb upstream 13381 true Chr03: 42538695-42552075 Glycine max
Glyma.03G222500 10.0kb upstream 10.0kb upstream 10000 false Chr03: 42542076-42552075 Glycine max
Glyma.03G222500 10.0kb downstream 10.0kb downstream 13381 true Chr03: 42528695-42542075 Glycine max
Glyma.03G222500 10.0kb downstream 10.0kb downstream 10000 false Chr03: 42528695-42538694 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312422 5265 Fabidae View MSA
124066514 5270 Rosid View MSA
123746353 5271 Pentapetalae View MSA
122791695 5272 Eudicot View MSA
122048646 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.037582 0.0 0.155557 Low Low
cufflinks 2.37324 0.0 7.62201   High
cufflinks 0.178683 0.0 0.691167 Low  
cufflinks 1.21564 0.0 4.22851    
cufflinks 0.626373 0.0 2.28946    
cufflinks 0.185592 0.0 0.71804 Low  
cufflinks 0.648427 0.0 2.3663    
cufflinks 1.284 0.0 4.44199    
cufflinks 0.45215 0.0 1.67993    
cufflinks 0.274        
cufflinks 0.029     Low Low
cufflinks 0.32        
cufflinks 0.281        
cufflinks 0.376        
cufflinks 0.017     Low Low
cufflinks 0.375        
cufflinks 0.072        
cufflinks 0.434        
cufflinks 1.149       High
cufflinks 0.182        
cufflinks 0.073        
cufflinks 0.29        
cufflinks 0.295        
cufflinks 0.103        
cufflinks 0.247        
cufflinks 0.06     Low  

0 Strain