Gene : Glyma.04G069600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11624:SF64 - 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN Genomic Order:  696
Name:  ? Glyma.04G069600 Secondary Identifier:  ? PAC:30487317
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G069600 0.5kb upstream 0.5kb upstream 7199 true Chr04: 5800170-5807368 Glycine max
Glyma.04G069600 0.5kb upstream 0.5kb upstream 500 false Chr04: 5806869-5807368 Glycine max
Glyma.04G069600 0.5kb downstream 0.5kb downstream 7199 true Chr04: 5799670-5806868 Glycine max
Glyma.04G069600 0.5kb downstream 0.5kb downstream 500 false Chr04: 5799670-5800169 Glycine max
Glyma.04G069600 1.0kb upstream 1.0kb upstream 7699 true Chr04: 5800170-5807868 Glycine max
Glyma.04G069600 1.0kb upstream 1.0kb upstream 1000 false Chr04: 5806869-5807868 Glycine max
Glyma.04G069600 1.0kb downstream 1.0kb downstream 7699 true Chr04: 5799170-5806868 Glycine max
Glyma.04G069600 1.0kb downstream 1.0kb downstream 1000 false Chr04: 5799170-5800169 Glycine max
Glyma.04G069600 2.0kb upstream 2.0kb upstream 8699 true Chr04: 5800170-5808868 Glycine max
Glyma.04G069600 2.0kb upstream 2.0kb upstream 2000 false Chr04: 5806869-5808868 Glycine max
Glyma.04G069600 2.0kb downstream 2.0kb downstream 8699 true Chr04: 5798170-5806868 Glycine max
Glyma.04G069600 2.0kb downstream 2.0kb downstream 2000 false Chr04: 5798170-5800169 Glycine max
Glyma.04G069600 5.0kb upstream 5.0kb upstream 11699 true Chr04: 5800170-5811868 Glycine max
Glyma.04G069600 5.0kb upstream 5.0kb upstream 5000 false Chr04: 5806869-5811868 Glycine max
Glyma.04G069600 5.0kb downstream 5.0kb downstream 11699 true Chr04: 5795170-5806868 Glycine max
Glyma.04G069600 5.0kb downstream 5.0kb downstream 5000 false Chr04: 5795170-5800169 Glycine max
Glyma.04G069600 10.0kb upstream 10.0kb upstream 16699 true Chr04: 5800170-5816868 Glycine max
Glyma.04G069600 10.0kb upstream 10.0kb upstream 10000 false Chr04: 5806869-5816868 Glycine max
Glyma.04G069600 10.0kb downstream 10.0kb downstream 16699 true Chr04: 5790170-5806868 Glycine max
Glyma.04G069600 10.0kb downstream 10.0kb downstream 10000 false Chr04: 5790170-5800169 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308713 5265 Fabidae View MSA
124066019 5270 Rosid View MSA
123737503 5271 Pentapetalae View MSA
122791788 5272 Eudicot View MSA
122044949 5273 Angiosperm View MSA
121310367 5274 Embryophyte View MSA
123347869 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.286435 0.0 2.45892   Low
cufflinks 2.27912 0.0 12.5608    
cufflinks 1.24748 0.0 7.38027    
cufflinks 5.85534 0.0 24.8483    
cufflinks 2.81966 0.0 15.6908    
cufflinks 1.34678 0.0 10.9512    
cufflinks 6.30104 0.0 26.5877   High
cufflinks 5.94228 0.0 24.5382   High
cufflinks 1.68603 0.0 10.2654    
cufflinks 0.557       High
cufflinks 0.091        
cufflinks 0.122        
cufflinks 0.236        
cufflinks 0.287        
cufflinks 0.019     Low Low
cufflinks 0.148        
cufflinks 0.271        
cufflinks 0.241        
cufflinks 0.229        
cufflinks 0.068     Low  
cufflinks 0.131        
cufflinks 0.08     Low  
cufflinks 0.082     Low  
cufflinks 0.075        
cufflinks 0.107        
cufflinks 0.169        

0 Strain