Gene : Glyma.04G089800 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR13812//PTHR13812:SF20 - ORNITHINE CYCLODEAMINASE-RELATED Genomic Order:  898
Name:  ? Glyma.04G089800 Secondary Identifier:  ? PAC:30491029
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5188 Glycine max pathologic  
Gmax PWY-5918 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G089800 0.5kb upstream 0.5kb upstream 3377 true Chr04: 7839091-7842467 Glycine max
Glyma.04G089800 0.5kb upstream 0.5kb upstream 500 false Chr04: 7839091-7839590 Glycine max
Glyma.04G089800 0.5kb downstream 0.5kb downstream 3377 true Chr04: 7839591-7842967 Glycine max
Glyma.04G089800 0.5kb downstream 0.5kb downstream 500 false Chr04: 7842468-7842967 Glycine max
Glyma.04G089800 1.0kb upstream 1.0kb upstream 3877 true Chr04: 7838591-7842467 Glycine max
Glyma.04G089800 1.0kb upstream 1.0kb upstream 1000 false Chr04: 7838591-7839590 Glycine max
Glyma.04G089800 1.0kb downstream 1.0kb downstream 3877 true Chr04: 7839591-7843467 Glycine max
Glyma.04G089800 1.0kb downstream 1.0kb downstream 1000 false Chr04: 7842468-7843467 Glycine max
Glyma.04G089800 2.0kb upstream 2.0kb upstream 4877 true Chr04: 7837591-7842467 Glycine max
Glyma.04G089800 2.0kb upstream 2.0kb upstream 2000 false Chr04: 7837591-7839590 Glycine max
Glyma.04G089800 2.0kb downstream 2.0kb downstream 4877 true Chr04: 7839591-7844467 Glycine max
Glyma.04G089800 2.0kb downstream 2.0kb downstream 2000 false Chr04: 7842468-7844467 Glycine max
Glyma.04G089800 5.0kb upstream 5.0kb upstream 7877 true Chr04: 7834591-7842467 Glycine max
Glyma.04G089800 5.0kb upstream 5.0kb upstream 5000 false Chr04: 7834591-7839590 Glycine max
Glyma.04G089800 5.0kb downstream 5.0kb downstream 7877 true Chr04: 7839591-7847467 Glycine max
Glyma.04G089800 5.0kb downstream 5.0kb downstream 5000 false Chr04: 7842468-7847467 Glycine max
Glyma.04G089800 10.0kb upstream 10.0kb upstream 12877 true Chr04: 7829591-7842467 Glycine max
Glyma.04G089800 10.0kb upstream 10.0kb upstream 10000 false Chr04: 7829591-7839590 Glycine max
Glyma.04G089800 10.0kb downstream 10.0kb downstream 12877 true Chr04: 7839591-7852467 Glycine max
Glyma.04G089800 10.0kb downstream 10.0kb downstream 10000 false Chr04: 7842468-7852467 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308158 5265 Fabidae View MSA
124065838 5270 Rosid View MSA
123737748 5271 Pentapetalae View MSA
122790191 5272 Eudicot View MSA
122042343 5273 Angiosperm View MSA
121344593 5274 Embryophyte View MSA
123424931 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.4083 0.0 41.154    
cufflinks 17.7618 0.0 47.5953    
cufflinks 12.0348 0.0 32.1187    
cufflinks 17.7526 0.0 47.5761    
cufflinks 10.5899 0.0 28.3226    
cufflinks 15.933 0.0 42.5858    
cufflinks 16.9278 0.0 45.2881    
cufflinks 9.97744 0.0 26.718    
cufflinks 7.69432 0.0 20.8261   Low
cufflinks 17.653     High  
cufflinks 6.46     High Low
cufflinks 11.842     High  
cufflinks 8.853     High  
cufflinks 7.406     High  
cufflinks 5.936     High Low
cufflinks 30.49     High High
cufflinks 11.661     High  
cufflinks 16.415     High  
cufflinks 18.221     High  
cufflinks 32.612     High High
cufflinks 7.075     High Low
cufflinks 34.707     High High
cufflinks 27.289     High High
cufflinks 9.07     High  
cufflinks 34.037     High High
cufflinks 6.697     High Low

0 Strain