Gene : Glyma.04G187000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10625:SF109 - HISTONE DEACETYLASE 2 Genomic Order:  1870
Name:  ? Glyma.04G187000 Secondary Identifier:  ? PAC:30490495
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G187000 0.5kb upstream 0.5kb upstream 5597 true Chr04: 45732393-45737989 Glycine max
Glyma.04G187000 0.5kb upstream 0.5kb upstream 500 false Chr04: 45737490-45737989 Glycine max
Glyma.04G187000 0.5kb downstream 0.5kb downstream 5597 true Chr04: 45731893-45737489 Glycine max
Glyma.04G187000 0.5kb downstream 0.5kb downstream 500 false Chr04: 45731893-45732392 Glycine max
Glyma.04G187000 1.0kb upstream 1.0kb upstream 6097 true Chr04: 45732393-45738489 Glycine max
Glyma.04G187000 1.0kb upstream 1.0kb upstream 1000 false Chr04: 45737490-45738489 Glycine max
Glyma.04G187000 1.0kb downstream 1.0kb downstream 6097 true Chr04: 45731393-45737489 Glycine max
Glyma.04G187000 1.0kb downstream 1.0kb downstream 1000 false Chr04: 45731393-45732392 Glycine max
Glyma.04G187000 2.0kb upstream 2.0kb upstream 7097 true Chr04: 45732393-45739489 Glycine max
Glyma.04G187000 2.0kb upstream 2.0kb upstream 2000 false Chr04: 45737490-45739489 Glycine max
Glyma.04G187000 2.0kb downstream 2.0kb downstream 7097 true Chr04: 45730393-45737489 Glycine max
Glyma.04G187000 2.0kb downstream 2.0kb downstream 2000 false Chr04: 45730393-45732392 Glycine max
Glyma.04G187000 5.0kb upstream 5.0kb upstream 10097 true Chr04: 45732393-45742489 Glycine max
Glyma.04G187000 5.0kb upstream 5.0kb upstream 5000 false Chr04: 45737490-45742489 Glycine max
Glyma.04G187000 5.0kb downstream 5.0kb downstream 10097 true Chr04: 45727393-45737489 Glycine max
Glyma.04G187000 5.0kb downstream 5.0kb downstream 5000 false Chr04: 45727393-45732392 Glycine max
Glyma.04G187000 10.0kb upstream 10.0kb upstream 15097 true Chr04: 45732393-45747489 Glycine max
Glyma.04G187000 10.0kb upstream 10.0kb upstream 10000 false Chr04: 45737490-45747489 Glycine max
Glyma.04G187000 10.0kb downstream 10.0kb downstream 15097 true Chr04: 45722393-45737489 Glycine max
Glyma.04G187000 10.0kb downstream 10.0kb downstream 10000 false Chr04: 45722393-45732392 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299156 5265 Fabidae View MSA
124068435 5270 Rosid View MSA
123739181 5271 Pentapetalae View MSA
122793784 5272 Eudicot View MSA
122043471 5273 Angiosperm View MSA
123429001 5275 Viridiplantae View MSA
121349926 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.37671 0.0 27.8386    
cufflinks 9.82385 0.0 32.0732    
cufflinks 5.31922 0.0 20.2526   Low
cufflinks 11.7443 0.0 37.8874    
cufflinks 11.4216 0.0 36.7822    
cufflinks 4.93546 0.0 17.5136   Low
cufflinks 16.0386 0.0 51.2291   High
cufflinks 9.38215 0.0 30.801    
cufflinks 14.2419 0.0 45.2186   High
cufflinks 1.434        
cufflinks 0.222       Low
cufflinks 1.601        
cufflinks 1.479        
cufflinks 1.763        
cufflinks 1.16        
cufflinks 1.68        
cufflinks 0.68        
cufflinks 1.757        
cufflinks 1.859        
cufflinks 1.413        
cufflinks 0.359       Low
cufflinks 1.704        
cufflinks 1.517        
cufflinks 0.4       Low
cufflinks 1.436        
cufflinks 0.648        

0 Strain