Gene : Glyma.04G200400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11638:SF119 - CHAPERONE PROTEIN CLPC1, CHLOROPLASTIC Genomic Order:  2004
Name:  ? Glyma.04G200400 Secondary Identifier:  ? PAC:30491104
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G200400 0.5kb upstream 0.5kb upstream 7969 true Chr04: 47289746-47297714 Glycine max
Glyma.04G200400 0.5kb upstream 0.5kb upstream 500 false Chr04: 47297215-47297714 Glycine max
Glyma.04G200400 0.5kb downstream 0.5kb downstream 7969 true Chr04: 47289246-47297214 Glycine max
Glyma.04G200400 0.5kb downstream 0.5kb downstream 500 false Chr04: 47289246-47289745 Glycine max
Glyma.04G200400 1.0kb upstream 1.0kb upstream 8469 true Chr04: 47289746-47298214 Glycine max
Glyma.04G200400 1.0kb upstream 1.0kb upstream 1000 false Chr04: 47297215-47298214 Glycine max
Glyma.04G200400 1.0kb downstream 1.0kb downstream 8469 true Chr04: 47288746-47297214 Glycine max
Glyma.04G200400 1.0kb downstream 1.0kb downstream 1000 false Chr04: 47288746-47289745 Glycine max
Glyma.04G200400 2.0kb upstream 2.0kb upstream 9469 true Chr04: 47289746-47299214 Glycine max
Glyma.04G200400 2.0kb upstream 2.0kb upstream 2000 false Chr04: 47297215-47299214 Glycine max
Glyma.04G200400 2.0kb downstream 2.0kb downstream 9469 true Chr04: 47287746-47297214 Glycine max
Glyma.04G200400 2.0kb downstream 2.0kb downstream 2000 false Chr04: 47287746-47289745 Glycine max
Glyma.04G200400 5.0kb upstream 5.0kb upstream 12469 true Chr04: 47289746-47302214 Glycine max
Glyma.04G200400 5.0kb upstream 5.0kb upstream 5000 false Chr04: 47297215-47302214 Glycine max
Glyma.04G200400 5.0kb downstream 5.0kb downstream 12469 true Chr04: 47284746-47297214 Glycine max
Glyma.04G200400 5.0kb downstream 5.0kb downstream 5000 false Chr04: 47284746-47289745 Glycine max
Glyma.04G200400 10.0kb upstream 10.0kb upstream 17469 true Chr04: 47289746-47307214 Glycine max
Glyma.04G200400 10.0kb upstream 10.0kb upstream 10000 false Chr04: 47297215-47307214 Glycine max
Glyma.04G200400 10.0kb downstream 10.0kb downstream 17469 true Chr04: 47279746-47297214 Glycine max
Glyma.04G200400 10.0kb downstream 10.0kb downstream 10000 false Chr04: 47279746-47289745 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307634 5265 Fabidae View MSA
124063020 5270 Rosid View MSA
123738110 5271 Pentapetalae View MSA
122796801 5272 Eudicot View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 125.996 0.0 1235.22 High High
cufflinks 42.7972 0.0 218.61 High  
cufflinks 216.881 0.0 3495.98 High High
cufflinks 29.1968 0.0 129.671 High  
cufflinks 21.5387 0.0 86.0361 High  
cufflinks 19.4687 0.0 64.8376    
cufflinks 32.5592 0.0 147.608 High  
cufflinks 34.7478 0.0 162.918 High  
cufflinks 19.6702 0.0 76.4504 High  
cufflinks 6.245        
cufflinks 5.694     High  
cufflinks 37.09     High High
cufflinks 3.939       Low
cufflinks 3.392       Low
cufflinks 3.95       Low
cufflinks 20.177     High High
cufflinks 5.569        
cufflinks 10.57     High  
cufflinks 10.272     High  
cufflinks 21.062     High High
cufflinks 3.942       Low
cufflinks 20.882     High High
cufflinks 17.404     High  
cufflinks 5.925        
cufflinks 20.664     High High
cufflinks 4.435        

0 Strain