Gene : Glyma.04G004900 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS Genomic Order:  49
Name:  ? Glyma.04G004900 Secondary Identifier:  ? PAC:30490277
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G004900 0.5kb upstream 0.5kb upstream 1998 true Chr04: 417844-419841 Glycine max
Glyma.04G004900 0.5kb upstream 0.5kb upstream 500 false Chr04: 417844-418343 Glycine max
Glyma.04G004900 0.5kb downstream 0.5kb downstream 1998 true Chr04: 418344-420341 Glycine max
Glyma.04G004900 0.5kb downstream 0.5kb downstream 500 false Chr04: 419842-420341 Glycine max
Glyma.04G004900 1.0kb upstream 1.0kb upstream 2498 true Chr04: 417344-419841 Glycine max
Glyma.04G004900 1.0kb upstream 1.0kb upstream 1000 false Chr04: 417344-418343 Glycine max
Glyma.04G004900 1.0kb downstream 1.0kb downstream 2498 true Chr04: 418344-420841 Glycine max
Glyma.04G004900 1.0kb downstream 1.0kb downstream 1000 false Chr04: 419842-420841 Glycine max
Glyma.04G004900 2.0kb upstream 2.0kb upstream 3498 true Chr04: 416344-419841 Glycine max
Glyma.04G004900 2.0kb upstream 2.0kb upstream 2000 false Chr04: 416344-418343 Glycine max
Glyma.04G004900 2.0kb downstream 2.0kb downstream 3498 true Chr04: 418344-421841 Glycine max
Glyma.04G004900 2.0kb downstream 2.0kb downstream 2000 false Chr04: 419842-421841 Glycine max
Glyma.04G004900 5.0kb upstream 5.0kb upstream 6498 true Chr04: 413344-419841 Glycine max
Glyma.04G004900 5.0kb upstream 5.0kb upstream 5000 false Chr04: 413344-418343 Glycine max
Glyma.04G004900 5.0kb downstream 5.0kb downstream 6498 true Chr04: 418344-424841 Glycine max
Glyma.04G004900 5.0kb downstream 5.0kb downstream 5000 false Chr04: 419842-424841 Glycine max
Glyma.04G004900 10.0kb upstream 10.0kb upstream 11498 true Chr04: 408344-419841 Glycine max
Glyma.04G004900 10.0kb upstream 10.0kb upstream 10000 false Chr04: 408344-418343 Glycine max
Glyma.04G004900 10.0kb downstream 10.0kb downstream 11498 true Chr04: 418344-429841 Glycine max
Glyma.04G004900 10.0kb downstream 10.0kb downstream 10000 false Chr04: 419842-429841 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314703 5265 Fabidae View MSA
124063967 5270 Rosid View MSA
123747748 5271 Pentapetalae View MSA
122791026 5272 Eudicot View MSA
122042982 5273 Angiosperm View MSA
121347174 5274 Embryophyte View MSA
123428407 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.2558 0.0 38.3502   Low
cufflinks 24.5197 0.0 65.4353 High  
cufflinks 18.3654 0.0 49.0968    
cufflinks 30.2506 0.0 81.1454 High  
cufflinks 28.1953 0.0 75.6152 High  
cufflinks 17.2428 0.0 46.096    
cufflinks 24.2791 0.0 64.851 High  
cufflinks 45.0497 0.0 123.206 High High
cufflinks 21.6567 0.0 57.7772 High  
cufflinks 29.653     High High
cufflinks 2.498       Low
cufflinks 13.584     High  
cufflinks 18.784     High  
cufflinks 24.125     High High
cufflinks 3.108       Low
cufflinks 12.568     High  
cufflinks 6.421     High  
cufflinks 22.899     High High
cufflinks 22.374     High High
cufflinks 9.073     High  
cufflinks 3.712       Low
cufflinks 12.364     High  
cufflinks 12.956     High  
cufflinks 4.065       Low
cufflinks 10.295     High  
cufflinks 4.387       Low

0 Strain