Protein Family : cold shock domain protein 1 123428407

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  222

222 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29908.t000199 (1 of 1) PF00098//PF00313 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) R. communis v0.1 555   29908: 211765-212319
31478.t000002 (1 of 5) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS R. communis v0.1 204   31478: 269-472
29405.t000010 (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS // SUBFAMILY NOT NAMED R. communis v0.1 1205   29405: 50629-51833
27472.t000010 (1 of 5) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS R. communis v0.1 204   27472: 14331-14534
Cucsa.248460 (1 of 2) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. sativus v1.0 3859   scaffold02207: 293464-297322
Cucsa.381750 (1 of 2) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. sativus v1.0 1141   scaffold03866: 10637-11777
orange1.1g030905m.g (1 of 1) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. sinensis v1.1 951   scaffold00004: 830492-831442
orange1.1g047168m.g (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing C. sinensis v1.1 777   scaffold00017: 882337-883113
AT4G36020 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) A. thaliana TAIR10 CSDP1 1285   Chr4: 17043112-17044396
AT4G38680 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS A. thaliana TAIR10 GRP2 1299   Chr4: 18071884-18073182
AT2G21060 (1 of 3) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS A. thaliana TAIR10 GRP2B 858   Chr2: 9036793-9037650
AT2G17870 (1 of 3) K09250 - cellular nucleic acid-binding protein (CNBP) A. thaliana TAIR10 CSP3 1256   Chr2: 7763975-7765230
Thhalv10026001m.g (1 of 1) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing E. salsugineum v1.0 1325   scaffold_1: 1716728-1718052
Thhalv10022795m.g (1 of 2) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS E. salsugineum v1.0 1340   scaffold_11: 1186185-1187524
Ciclev10002696m.g (1 of 1) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. clementina v1.0 779   scaffold_5: 37113171-37113949
Ciclev10027474m.g (1 of 1) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. clementina v1.0 795   scaffold_7: 921138-921932
Lus10028073.g (1 of 7) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 579   scaffold132: 642864-643442
Lus10005066.g (1 of 3) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing L. usitatissimum v1.0 480   scaffold1982: 172689-173168
Lus10041902.g (1 of 2) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 741   scaffold272: 2267368-2268108
Lus10025058.g (1 of 7) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 261   scaffold305: 65871-66131
Lus10034487.g (1 of 7) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 550   scaffold310: 1526796-1527345
Lus10028449.g (1 of 2) PTHR11544//PTHR11544:SF50 - COLD SHOCK DOMAIN CONTAINING PROTEINS L. usitatissimum v1.0 744   scaffold413: 680100-680843
Gorai.002G003500 (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 904   Chr02: 195345-196248
Gorai.002G195100 (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 3755   Chr02: 52798613-52802367
Gorai.002G195000 (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 1409   Chr02: 52786495-52787903
Gorai.008G062500 (1 of 1) PF00098//PF00313//PF14392 - Zinc knuckle (zf-CCHC) // 'Cold-shock' DNA-binding domain (CSD) // Zinc knuckle (zf-CCHC_4) G. raimondii v2.1 2139   Chr08: 10033178-10035316
Gorai.009G243500 (1 of 3) KOG3070 - Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing G. raimondii v2.1 1058   Chr09: 19496296-19497353
Gorai.005G253200 (1 of 8) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 661   Chr05: 63097845-63098505
Gorai.010G048300 (1 of 1) PTHR11544//PTHR11544:SF57 - COLD SHOCK DOMAIN CONTAINING PROTEINS G. raimondii v2.1 522   Chr10: 5276099-5276620
fgenesh1_pg_1_num_433 (1 of 2) PTHR11544 - COLD SHOCK DOMAIN CONTAINING PROTEINS C. subellipsoidea C-169 v2.0 2062   scaffold_1: 2966717-2968778

222 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
31478.m000031 R. communis v0.1 123428407 cold shock domain protein 1 4 5275 Viridiplantae
27472.m000302 R. communis v0.1 123428407 cold shock domain protein 1 4 5275 Viridiplantae
29908.m006148 R. communis v0.1 123428407 cold shock domain protein 1 4 5275 Viridiplantae
29405.m000161 R. communis v0.1 123428407 cold shock domain protein 1 4 5275 Viridiplantae
Cucsa.381750.1 C. sativus v1.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae
Cucsa.248460.1 C. sativus v1.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae
orange1.1g030905m C. sinensis v1.1 123428407 cold shock domain protein 1 2 5275 Viridiplantae
orange1.1g047168m C. sinensis v1.1 123428407 cold shock domain protein 1 2 5275 Viridiplantae
AT4G38680.1 A. thaliana TAIR10 123428407 cold shock domain protein 1 4 5275 Viridiplantae
AT2G17870.1 A. thaliana TAIR10 123428407 cold shock domain protein 1 4 5275 Viridiplantae
AT4G36020.1 A. thaliana TAIR10 123428407 cold shock domain protein 1 4 5275 Viridiplantae
AT2G21060.1 A. thaliana TAIR10 123428407 cold shock domain protein 1 4 5275 Viridiplantae
Thhalv10026001m E. salsugineum v1.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae
Thhalv10022795m E. salsugineum v1.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae
Ciclev10027474m C. clementina v1.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae
Ciclev10002696m C. clementina v1.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae
Lus10028449 L. usitatissimum v1.0 123428407 cold shock domain protein 1 6 5275 Viridiplantae
Lus10028073 L. usitatissimum v1.0 123428407 cold shock domain protein 1 6 5275 Viridiplantae
Lus10005066 L. usitatissimum v1.0 123428407 cold shock domain protein 1 6 5275 Viridiplantae
Lus10041902 L. usitatissimum v1.0 123428407 cold shock domain protein 1 6 5275 Viridiplantae
Lus10025058 L. usitatissimum v1.0 123428407 cold shock domain protein 1 6 5275 Viridiplantae
Lus10034487 L. usitatissimum v1.0 123428407 cold shock domain protein 1 6 5275 Viridiplantae
Gorai.010G048300.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
Gorai.009G243500.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
Gorai.005G253200.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
Gorai.002G003500.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
Gorai.002G195100.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
Gorai.002G195000.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
Gorai.008G062500.1 G. raimondii v2.1 123428407 cold shock domain protein 1 7 5275 Viridiplantae
45992 C. subellipsoidea C-169 v2.0 123428407 cold shock domain protein 1 2 5275 Viridiplantae