Gene : Glyma.19G175900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24093:SF289 - CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  1759
Name:  ? Glyma.19G175900 Secondary Identifier:  ? PAC:30512233
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G175900 0.5kb upstream 0.5kb upstream 7097 true Chr19: 43586864-43593960 Glycine max
Glyma.19G175900 0.5kb upstream 0.5kb upstream 500 false Chr19: 43586864-43587363 Glycine max
Glyma.19G175900 0.5kb downstream 0.5kb downstream 7097 true Chr19: 43587364-43594460 Glycine max
Glyma.19G175900 0.5kb downstream 0.5kb downstream 500 false Chr19: 43593961-43594460 Glycine max
Glyma.19G175900 1.0kb upstream 1.0kb upstream 7597 true Chr19: 43586364-43593960 Glycine max
Glyma.19G175900 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43586364-43587363 Glycine max
Glyma.19G175900 1.0kb downstream 1.0kb downstream 7597 true Chr19: 43587364-43594960 Glycine max
Glyma.19G175900 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43593961-43594960 Glycine max
Glyma.19G175900 2.0kb upstream 2.0kb upstream 8597 true Chr19: 43585364-43593960 Glycine max
Glyma.19G175900 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43585364-43587363 Glycine max
Glyma.19G175900 2.0kb downstream 2.0kb downstream 8597 true Chr19: 43587364-43595960 Glycine max
Glyma.19G175900 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43593961-43595960 Glycine max
Glyma.19G175900 5.0kb upstream 5.0kb upstream 11597 true Chr19: 43582364-43593960 Glycine max
Glyma.19G175900 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43582364-43587363 Glycine max
Glyma.19G175900 5.0kb downstream 5.0kb downstream 11597 true Chr19: 43587364-43598960 Glycine max
Glyma.19G175900 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43593961-43598960 Glycine max
Glyma.19G175900 10.0kb upstream 10.0kb upstream 16597 true Chr19: 43577364-43593960 Glycine max
Glyma.19G175900 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43577364-43587363 Glycine max
Glyma.19G175900 10.0kb downstream 10.0kb downstream 16597 true Chr19: 43587364-43603960 Glycine max
Glyma.19G175900 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43593961-43603960 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307555 5265 Fabidae View MSA
124070166 5270 Rosid View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.6702 0.0 84.5977 High  
cufflinks 15.7325 0.0 43.2412    
cufflinks 17.3196 0.0 48.0657    
cufflinks 23.6443 0.0 67.8963 High  
cufflinks 34.0889 0.0 103.391 High High
cufflinks 31.5015 0.0 94.4221 High  
cufflinks 10.2965 0.0 27.6328   Low
cufflinks 23.4672 0.0 67.3039 High  
cufflinks 27.5304 0.0 80.763 High  
cufflinks 19.81     High  
cufflinks 6.141     High Low
cufflinks 17.148     High  
cufflinks 24.792     High High
cufflinks 28.382     High High
cufflinks 21.27     High  
cufflinks 14.556     High  
cufflinks 11.054     High  
cufflinks 17.433     High  
cufflinks 15.525     High  
cufflinks 13.366     High  
cufflinks 8.056     High Low
cufflinks 15.685     High  
cufflinks 14.538     High  
cufflinks 9.123     High Low
cufflinks 13.864     High  
cufflinks 10.218     High  

0 Strain