Gene : Glyma.19G173200 G. max Wm82.a2.v1
Defline:  (1 of 477) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  1732
Name:  ? Glyma.19G173200 Secondary Identifier:  ? PAC:30514647
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G173200 0.5kb upstream 0.5kb upstream 3293 true Chr19: 43369894-43373186 Glycine max
Glyma.19G173200 0.5kb upstream 0.5kb upstream 500 false Chr19: 43369894-43370393 Glycine max
Glyma.19G173200 0.5kb downstream 0.5kb downstream 3293 true Chr19: 43370394-43373686 Glycine max
Glyma.19G173200 0.5kb downstream 0.5kb downstream 500 false Chr19: 43373187-43373686 Glycine max
Glyma.19G173200 1.0kb upstream 1.0kb upstream 3793 true Chr19: 43369394-43373186 Glycine max
Glyma.19G173200 1.0kb upstream 1.0kb upstream 1000 false Chr19: 43369394-43370393 Glycine max
Glyma.19G173200 1.0kb downstream 1.0kb downstream 3793 true Chr19: 43370394-43374186 Glycine max
Glyma.19G173200 1.0kb downstream 1.0kb downstream 1000 false Chr19: 43373187-43374186 Glycine max
Glyma.19G173200 2.0kb upstream 2.0kb upstream 4793 true Chr19: 43368394-43373186 Glycine max
Glyma.19G173200 2.0kb upstream 2.0kb upstream 2000 false Chr19: 43368394-43370393 Glycine max
Glyma.19G173200 2.0kb downstream 2.0kb downstream 4793 true Chr19: 43370394-43375186 Glycine max
Glyma.19G173200 2.0kb downstream 2.0kb downstream 2000 false Chr19: 43373187-43375186 Glycine max
Glyma.19G173200 5.0kb upstream 5.0kb upstream 7793 true Chr19: 43365394-43373186 Glycine max
Glyma.19G173200 5.0kb upstream 5.0kb upstream 5000 false Chr19: 43365394-43370393 Glycine max
Glyma.19G173200 5.0kb downstream 5.0kb downstream 7793 true Chr19: 43370394-43378186 Glycine max
Glyma.19G173200 5.0kb downstream 5.0kb downstream 5000 false Chr19: 43373187-43378186 Glycine max
Glyma.19G173200 10.0kb upstream 10.0kb upstream 12793 true Chr19: 43360394-43373186 Glycine max
Glyma.19G173200 10.0kb upstream 10.0kb upstream 10000 false Chr19: 43360394-43370393 Glycine max
Glyma.19G173200 10.0kb downstream 10.0kb downstream 12793 true Chr19: 43370394-43383186 Glycine max
Glyma.19G173200 10.0kb downstream 10.0kb downstream 10000 false Chr19: 43373187-43383186 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305005 5265 Fabidae View MSA
124065656 5270 Rosid View MSA
123746310 5271 Pentapetalae View MSA
122791948 5272 Eudicot View MSA
122051373 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349952 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.4162 0.0 50.8521   High
cufflinks 8.55006 0.0 25.745    
cufflinks 3.95767 0.0 13.2169   Low
cufflinks 5.3817 0.0 17.2713    
cufflinks 15.7732 0.0 44.1213   High
cufflinks 13.5819 0.0 38.6044    
cufflinks 5.94652 0.0 18.8963    
cufflinks 7.92213 0.0 24.0393    
cufflinks 12.4002 0.0 35.5131    
cufflinks 2.01        
cufflinks 0.8       Low
cufflinks 2.128        
cufflinks 6.874       High
cufflinks 10.253     High High
cufflinks 1.621        
cufflinks 1.357        
cufflinks 1.543        
cufflinks 2.545        
cufflinks 2.565        
cufflinks 0.908       Low
cufflinks 1.153        
cufflinks 1.061        
cufflinks 2.068        
cufflinks 0.848       Low
cufflinks 1.268        
cufflinks 1.864        

0 Strain