Gene : Glyma.19G165800 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12640 - RIBOPHORIN II Genomic Order:  1658
Name:  ? Glyma.19G165800 Secondary Identifier:  ? PAC:30513203
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G165800 0.5kb upstream 0.5kb upstream 10227 true Chr19: 42692685-42702911 Glycine max
Glyma.19G165800 0.5kb upstream 0.5kb upstream 500 false Chr19: 42702412-42702911 Glycine max
Glyma.19G165800 0.5kb downstream 0.5kb downstream 10227 true Chr19: 42692185-42702411 Glycine max
Glyma.19G165800 0.5kb downstream 0.5kb downstream 500 false Chr19: 42692185-42692684 Glycine max
Glyma.19G165800 1.0kb upstream 1.0kb upstream 10727 true Chr19: 42692685-42703411 Glycine max
Glyma.19G165800 1.0kb upstream 1.0kb upstream 1000 false Chr19: 42702412-42703411 Glycine max
Glyma.19G165800 1.0kb downstream 1.0kb downstream 10727 true Chr19: 42691685-42702411 Glycine max
Glyma.19G165800 1.0kb downstream 1.0kb downstream 1000 false Chr19: 42691685-42692684 Glycine max
Glyma.19G165800 2.0kb upstream 2.0kb upstream 11727 true Chr19: 42692685-42704411 Glycine max
Glyma.19G165800 2.0kb upstream 2.0kb upstream 2000 false Chr19: 42702412-42704411 Glycine max
Glyma.19G165800 2.0kb downstream 2.0kb downstream 11727 true Chr19: 42690685-42702411 Glycine max
Glyma.19G165800 2.0kb downstream 2.0kb downstream 2000 false Chr19: 42690685-42692684 Glycine max
Glyma.19G165800 5.0kb upstream 5.0kb upstream 14727 true Chr19: 42692685-42707411 Glycine max
Glyma.19G165800 5.0kb upstream 5.0kb upstream 5000 false Chr19: 42702412-42707411 Glycine max
Glyma.19G165800 5.0kb downstream 5.0kb downstream 14727 true Chr19: 42687685-42702411 Glycine max
Glyma.19G165800 5.0kb downstream 5.0kb downstream 5000 false Chr19: 42687685-42692684 Glycine max
Glyma.19G165800 10.0kb upstream 10.0kb upstream 19727 true Chr19: 42692685-42712411 Glycine max
Glyma.19G165800 10.0kb upstream 10.0kb upstream 10000 false Chr19: 42702412-42712411 Glycine max
Glyma.19G165800 10.0kb downstream 10.0kb downstream 19727 true Chr19: 42682685-42702411 Glycine max
Glyma.19G165800 10.0kb downstream 10.0kb downstream 10000 false Chr19: 42682685-42692684 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041028 5273 Angiosperm View MSA
122310826 5265 Fabidae View MSA
124066748 5270 Rosid View MSA
123737285 5271 Pentapetalae View MSA
122787550 5272 Eudicot View MSA
121344151 5274 Embryophyte View MSA
123379986 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 41.3738 0.0 119.583 High  
cufflinks 29.844 0.0 83.2202 High  
cufflinks 16.0374 0.0 42.9909   Low
cufflinks 36.377 0.0 103.706 High  
cufflinks 50.8046 0.0 151.159 High  
cufflinks 36.7778 0.0 105.0 High  
cufflinks 65.3067 0.0 202.247 High High
cufflinks 26.9501 0.0 74.4559 High  
cufflinks 32.5811 0.0 91.7099 High  
cufflinks 10.634     High  
cufflinks 2.331       Low
cufflinks 6.961        
cufflinks 16.551     High High
cufflinks 20.821     High High
cufflinks 2.849       Low
cufflinks 7.513     High  
cufflinks 5.366        
cufflinks 8.802     High  
cufflinks 11.464     High  
cufflinks 6.364        
cufflinks 4.528        
cufflinks 7.285     High  
cufflinks 7.51     High  
cufflinks 4.901        
cufflinks 6.072        
cufflinks 4.419        

0 Strain