Gene : Glyma.04G156200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12601:SF9 - TETRATRICOPEPTIDE REPEAT DOMAIN PROTEIN Genomic Order:  1562
Name:  ? Glyma.04G156200 Secondary Identifier:  ? PAC:30489579
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.04G156200 0.5kb upstream 0.5kb upstream 20791 true Chr04: 36553440-36574230 Glycine max
Glyma.04G156200 0.5kb upstream 0.5kb upstream 500 false Chr04: 36573731-36574230 Glycine max
Glyma.04G156200 0.5kb downstream 0.5kb downstream 20791 true Chr04: 36552940-36573730 Glycine max
Glyma.04G156200 0.5kb downstream 0.5kb downstream 500 false Chr04: 36552940-36553439 Glycine max
Glyma.04G156200 1.0kb upstream 1.0kb upstream 21291 true Chr04: 36553440-36574730 Glycine max
Glyma.04G156200 1.0kb upstream 1.0kb upstream 1000 false Chr04: 36573731-36574730 Glycine max
Glyma.04G156200 1.0kb downstream 1.0kb downstream 21291 true Chr04: 36552440-36573730 Glycine max
Glyma.04G156200 1.0kb downstream 1.0kb downstream 1000 false Chr04: 36552440-36553439 Glycine max
Glyma.04G156200 2.0kb upstream 2.0kb upstream 22291 true Chr04: 36553440-36575730 Glycine max
Glyma.04G156200 2.0kb upstream 2.0kb upstream 2000 false Chr04: 36573731-36575730 Glycine max
Glyma.04G156200 2.0kb downstream 2.0kb downstream 22291 true Chr04: 36551440-36573730 Glycine max
Glyma.04G156200 2.0kb downstream 2.0kb downstream 2000 false Chr04: 36551440-36553439 Glycine max
Glyma.04G156200 5.0kb upstream 5.0kb upstream 25291 true Chr04: 36553440-36578730 Glycine max
Glyma.04G156200 5.0kb upstream 5.0kb upstream 5000 false Chr04: 36573731-36578730 Glycine max
Glyma.04G156200 5.0kb downstream 5.0kb downstream 25291 true Chr04: 36548440-36573730 Glycine max
Glyma.04G156200 5.0kb downstream 5.0kb downstream 5000 false Chr04: 36548440-36553439 Glycine max
Glyma.04G156200 10.0kb upstream 10.0kb upstream 30291 true Chr04: 36553440-36583730 Glycine max
Glyma.04G156200 10.0kb upstream 10.0kb upstream 10000 false Chr04: 36573731-36583730 Glycine max
Glyma.04G156200 10.0kb downstream 10.0kb downstream 30291 true Chr04: 36543440-36573730 Glycine max
Glyma.04G156200 10.0kb downstream 10.0kb downstream 10000 false Chr04: 36543440-36553439 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305487 5265 Fabidae View MSA
124073724 5270 Rosid View MSA
123753708 5271 Pentapetalae View MSA
122789807 5272 Eudicot View MSA
122044017 5273 Angiosperm View MSA
121347327 5274 Embryophyte View MSA
123427490 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.6768 0.0 45.9782   High
cufflinks 7.77966 0.0 21.1823   High
cufflinks 3.35882 0.0 8.97813    
cufflinks 3.21125 0.0 8.59438    
cufflinks 0.716683 0.0 2.22124    
cufflinks 0.594864 0.0 1.8913   Low
cufflinks 2.51959 0.0 6.81901    
cufflinks 1.44453 0.0 4.07296    
cufflinks 0.374172 0.0 1.26468   Low
cufflinks 2.254        
cufflinks 0.253        
cufflinks 2.109        
cufflinks 0.074     Low Low
cufflinks 0.171        
cufflinks 0.224        
cufflinks 18.649     High High
cufflinks 0.103       Low
cufflinks 2.013        
cufflinks 5.196        
cufflinks 23.138     High High
cufflinks 0.218        
cufflinks 19.262     High High
cufflinks 14.694     High High
cufflinks 0.268        
cufflinks 22.419     High High
cufflinks 0.115       Low

0 Strain