Gene : Glyma.19G200200 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR22849:SF38 - E3 UBIQUITIN-PROTEIN LIGASE PUB22-RELATED Genomic Order:  2002
Name:  ? Glyma.19G200200 Secondary Identifier:  ? PAC:30511744
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G200200 0.5kb upstream 0.5kb upstream 2380 true Chr19: 45718263-45720642 Glycine max
Glyma.19G200200 0.5kb upstream 0.5kb upstream 500 false Chr19: 45718263-45718762 Glycine max
Glyma.19G200200 0.5kb downstream 0.5kb downstream 2380 true Chr19: 45718763-45721142 Glycine max
Glyma.19G200200 0.5kb downstream 0.5kb downstream 500 false Chr19: 45720643-45721142 Glycine max
Glyma.19G200200 1.0kb upstream 1.0kb upstream 2880 true Chr19: 45717763-45720642 Glycine max
Glyma.19G200200 1.0kb upstream 1.0kb upstream 1000 false Chr19: 45717763-45718762 Glycine max
Glyma.19G200200 1.0kb downstream 1.0kb downstream 2880 true Chr19: 45718763-45721642 Glycine max
Glyma.19G200200 1.0kb downstream 1.0kb downstream 1000 false Chr19: 45720643-45721642 Glycine max
Glyma.19G200200 2.0kb upstream 2.0kb upstream 3880 true Chr19: 45716763-45720642 Glycine max
Glyma.19G200200 2.0kb upstream 2.0kb upstream 2000 false Chr19: 45716763-45718762 Glycine max
Glyma.19G200200 2.0kb downstream 2.0kb downstream 3880 true Chr19: 45718763-45722642 Glycine max
Glyma.19G200200 2.0kb downstream 2.0kb downstream 2000 false Chr19: 45720643-45722642 Glycine max
Glyma.19G200200 5.0kb upstream 5.0kb upstream 6880 true Chr19: 45713763-45720642 Glycine max
Glyma.19G200200 5.0kb upstream 5.0kb upstream 5000 false Chr19: 45713763-45718762 Glycine max
Glyma.19G200200 5.0kb downstream 5.0kb downstream 6880 true Chr19: 45718763-45725642 Glycine max
Glyma.19G200200 5.0kb downstream 5.0kb downstream 5000 false Chr19: 45720643-45725642 Glycine max
Glyma.19G200200 10.0kb upstream 10.0kb upstream 11880 true Chr19: 45708763-45720642 Glycine max
Glyma.19G200200 10.0kb upstream 10.0kb upstream 10000 false Chr19: 45708763-45718762 Glycine max
Glyma.19G200200 10.0kb downstream 10.0kb downstream 11880 true Chr19: 45718763-45730642 Glycine max
Glyma.19G200200 10.0kb downstream 10.0kb downstream 10000 false Chr19: 45720643-45730642 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314147 5265 Fabidae View MSA
124068371 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.4654 0.0 20.6589   High
cufflinks 0.0785265 0.0 0.313238 Low  
cufflinks 0.461098 0.0 1.70914    
cufflinks 0.0418349 0.0 0.171514 Low  
cufflinks 0.395326 0.0 1.47607    
cufflinks 14.6417 0.0 39.1265   High
cufflinks 0.00132655 0.0 0.00909447 Low Low
cufflinks 0.0932112 0.0 0.369356 Low  
cufflinks 0.615635 0.0 2.2449    
cufflinks 0.758        
cufflinks 1.441        
cufflinks 1.306        
cufflinks 0.29        
cufflinks 0.006     Low Low
cufflinks 3.519        
cufflinks 0.502        
cufflinks 23.019     High High
cufflinks 0.702        
cufflinks 0.054     Low Low
cufflinks 0.39        
cufflinks 1.746        
cufflinks 0.274        
cufflinks 0.23        
cufflinks 1.451        
cufflinks 0.071     Low Low
cufflinks 2.674        

0 Strain