Gene : Glyma.19G253000 G. max Wm82.a2.v1
Defline:  (1 of 33) KOG0417 - Ubiquitin-protein ligase Genomic Order:  2530
Name:  ? Glyma.19G253000 Secondary Identifier:  ? PAC:30511566
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.19G253000 0.5kb upstream 0.5kb upstream 4223 true Chr19: 49838328-49842550 Glycine max
Glyma.19G253000 0.5kb upstream 0.5kb upstream 500 false Chr19: 49838328-49838827 Glycine max
Glyma.19G253000 0.5kb downstream 0.5kb downstream 4223 true Chr19: 49838828-49843050 Glycine max
Glyma.19G253000 0.5kb downstream 0.5kb downstream 500 false Chr19: 49842551-49843050 Glycine max
Glyma.19G253000 1.0kb upstream 1.0kb upstream 4723 true Chr19: 49837828-49842550 Glycine max
Glyma.19G253000 1.0kb upstream 1.0kb upstream 1000 false Chr19: 49837828-49838827 Glycine max
Glyma.19G253000 1.0kb downstream 1.0kb downstream 4723 true Chr19: 49838828-49843550 Glycine max
Glyma.19G253000 1.0kb downstream 1.0kb downstream 1000 false Chr19: 49842551-49843550 Glycine max
Glyma.19G253000 2.0kb upstream 2.0kb upstream 5723 true Chr19: 49836828-49842550 Glycine max
Glyma.19G253000 2.0kb upstream 2.0kb upstream 2000 false Chr19: 49836828-49838827 Glycine max
Glyma.19G253000 2.0kb downstream 2.0kb downstream 5723 true Chr19: 49838828-49844550 Glycine max
Glyma.19G253000 2.0kb downstream 2.0kb downstream 2000 false Chr19: 49842551-49844550 Glycine max
Glyma.19G253000 5.0kb upstream 5.0kb upstream 8723 true Chr19: 49833828-49842550 Glycine max
Glyma.19G253000 5.0kb upstream 5.0kb upstream 5000 false Chr19: 49833828-49838827 Glycine max
Glyma.19G253000 5.0kb downstream 5.0kb downstream 8723 true Chr19: 49838828-49847550 Glycine max
Glyma.19G253000 5.0kb downstream 5.0kb downstream 5000 false Chr19: 49842551-49847550 Glycine max
Glyma.19G253000 10.0kb upstream 10.0kb upstream 13723 true Chr19: 49828828-49842550 Glycine max
Glyma.19G253000 10.0kb upstream 10.0kb upstream 10000 false Chr19: 49828828-49838827 Glycine max
Glyma.19G253000 10.0kb downstream 10.0kb downstream 13723 true Chr19: 49838828-49852550 Glycine max
Glyma.19G253000 10.0kb downstream 10.0kb downstream 10000 false Chr19: 49842551-49852550 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312683 5265 Fabidae View MSA
124072408 5270 Rosid View MSA
123751143 5271 Pentapetalae View MSA
122796795 5272 Eudicot View MSA
122049643 5273 Angiosperm View MSA
121351650 5274 Embryophyte View MSA
123428086 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 196.348 0.0 691.504 High High
cufflinks 67.5926 0.0 220.499 High Low
cufflinks 115.36 0.0 423.998 High  
cufflinks 78.9483 0.0 261.505 High  
cufflinks 94.5035 0.0 323.344 High  
cufflinks 93.3991 0.0 319.559 High  
cufflinks 75.5633 0.0 258.168 High  
cufflinks 122.807 0.0 440.738 High  
cufflinks 105.503 0.0 372.082 High  
cufflinks 8.506     High  
cufflinks 21.756     High High
cufflinks 7.276     High  
cufflinks 8.728     High  
cufflinks 6.067       Low
cufflinks 16.624     High High
cufflinks 7.646     High  
cufflinks 10.055     High  
cufflinks 7.42     High  
cufflinks 7.402        
cufflinks 7.316     High  
cufflinks 15.062     High High
cufflinks 7.457     High  
cufflinks 7.226        
cufflinks 18.625     High High
cufflinks 7.547     High  
cufflinks 10.554     High  

0 Strain