Gene : Glyma.20G056400 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR19288:SF25 - PHOSPHATIDYLGLYCEROPHOSPHATASE GEP4, MITOCHONDRIAL Genomic Order:  564
Name:  ? Glyma.20G056400 Secondary Identifier:  ? PAC:30522051
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY4FS-7 Glycine max pathologic  
Gmax PWY-5269 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G056400 0.5kb upstream 0.5kb upstream 4882 true Chr20: 14076559-14081440 Glycine max
Glyma.20G056400 0.5kb upstream 0.5kb upstream 500 false Chr20: 14076559-14077058 Glycine max
Glyma.20G056400 0.5kb downstream 0.5kb downstream 4882 true Chr20: 14077059-14081940 Glycine max
Glyma.20G056400 0.5kb downstream 0.5kb downstream 500 false Chr20: 14081441-14081940 Glycine max
Glyma.20G056400 1.0kb upstream 1.0kb upstream 5382 true Chr20: 14076059-14081440 Glycine max
Glyma.20G056400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 14076059-14077058 Glycine max
Glyma.20G056400 1.0kb downstream 1.0kb downstream 5382 true Chr20: 14077059-14082440 Glycine max
Glyma.20G056400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 14081441-14082440 Glycine max
Glyma.20G056400 2.0kb upstream 2.0kb upstream 6382 true Chr20: 14075059-14081440 Glycine max
Glyma.20G056400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 14075059-14077058 Glycine max
Glyma.20G056400 2.0kb downstream 2.0kb downstream 6382 true Chr20: 14077059-14083440 Glycine max
Glyma.20G056400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 14081441-14083440 Glycine max
Glyma.20G056400 5.0kb upstream 5.0kb upstream 9382 true Chr20: 14072059-14081440 Glycine max
Glyma.20G056400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 14072059-14077058 Glycine max
Glyma.20G056400 5.0kb downstream 5.0kb downstream 9382 true Chr20: 14077059-14086440 Glycine max
Glyma.20G056400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 14081441-14086440 Glycine max
Glyma.20G056400 10.0kb upstream 10.0kb upstream 14382 true Chr20: 14067059-14081440 Glycine max
Glyma.20G056400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 14067059-14077058 Glycine max
Glyma.20G056400 10.0kb downstream 10.0kb downstream 14382 true Chr20: 14077059-14091440 Glycine max
Glyma.20G056400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 14081441-14091440 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301851 5265 Fabidae View MSA
124061153 5270 Rosid View MSA
123744955 5271 Pentapetalae View MSA
122787883 5272 Eudicot View MSA
122047314 5273 Angiosperm View MSA
121345007 5274 Embryophyte View MSA
123425553 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7365 0.0 75.3595   High
cufflinks 17.164 0.0 79.2988   High
cufflinks 8.31761 0.0 38.382    
cufflinks 10.8161 0.0 52.0716    
cufflinks 7.68255 0.0 34.1674    
cufflinks 6.27534 0.0 33.3316   Low
cufflinks 10.3948 0.0 53.2466    
cufflinks 10.2047 0.0 50.3956    
cufflinks 7.03446 0.0 31.7292    
cufflinks 0.867        
cufflinks 0.314       Low
cufflinks 0.838        
cufflinks 0.557        
cufflinks 0.636        
cufflinks 0.401        
cufflinks 2.171       High
cufflinks 0.263       Low
cufflinks 1.081        
cufflinks 1.286        
cufflinks 2.209       High
cufflinks 0.289       Low
cufflinks 2.211       High
cufflinks 2.093       High
cufflinks 0.3       Low
cufflinks 2.26       High
cufflinks 0.31       Low

0 Strain