Gene : Glyma.20G090000 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24423:SF519 - PHYTOCHROME A Genomic Order:  900
Name:  ? Glyma.20G090000 Secondary Identifier:  ? PAC:30521509
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G090000 0.5kb upstream 0.5kb upstream 6175 true Chr20: 33235518-33241692 Glycine max
Glyma.20G090000 0.5kb upstream 0.5kb upstream 500 false Chr20: 33235518-33236017 Glycine max
Glyma.20G090000 0.5kb downstream 0.5kb downstream 6175 true Chr20: 33236018-33242192 Glycine max
Glyma.20G090000 0.5kb downstream 0.5kb downstream 500 false Chr20: 33241693-33242192 Glycine max
Glyma.20G090000 1.0kb upstream 1.0kb upstream 6675 true Chr20: 33235018-33241692 Glycine max
Glyma.20G090000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 33235018-33236017 Glycine max
Glyma.20G090000 1.0kb downstream 1.0kb downstream 6675 true Chr20: 33236018-33242692 Glycine max
Glyma.20G090000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 33241693-33242692 Glycine max
Glyma.20G090000 2.0kb upstream 2.0kb upstream 7675 true Chr20: 33234018-33241692 Glycine max
Glyma.20G090000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 33234018-33236017 Glycine max
Glyma.20G090000 2.0kb downstream 2.0kb downstream 7675 true Chr20: 33236018-33243692 Glycine max
Glyma.20G090000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 33241693-33243692 Glycine max
Glyma.20G090000 5.0kb upstream 5.0kb upstream 10675 true Chr20: 33231018-33241692 Glycine max
Glyma.20G090000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 33231018-33236017 Glycine max
Glyma.20G090000 5.0kb downstream 5.0kb downstream 10675 true Chr20: 33236018-33246692 Glycine max
Glyma.20G090000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 33241693-33246692 Glycine max
Glyma.20G090000 10.0kb upstream 10.0kb upstream 15675 true Chr20: 33226018-33241692 Glycine max
Glyma.20G090000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 33226018-33236017 Glycine max
Glyma.20G090000 10.0kb downstream 10.0kb downstream 15675 true Chr20: 33236018-33251692 Glycine max
Glyma.20G090000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 33241693-33251692 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299283 5265 Fabidae View MSA
124063137 5270 Rosid View MSA
123743412 5271 Pentapetalae View MSA
122786313 5272 Eudicot View MSA
122046553 5273 Angiosperm View MSA
121310619 5274 Embryophyte View MSA
123348057 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.0045 0.0 102.092 High High
cufflinks 13.6489 0.0 48.7164    
cufflinks 12.2436 0.0 43.351    
cufflinks 9.56117 0.0 32.9605    
cufflinks 50.0108 0.0 225.88 High High
cufflinks 12.4807 0.0 43.9873    
cufflinks 9.42163 0.0 32.4484    
cufflinks 12.0641 0.0 42.3996    
cufflinks 20.685 0.0 80.5705 High  
cufflinks 3.878       Low
cufflinks 5.654     High  
cufflinks 5.442        
cufflinks 7.97     High  
cufflinks 8.536     High  
cufflinks 10.95     High High
cufflinks 8.987     High  
cufflinks 3.435       Low
cufflinks 7.57     High  
cufflinks 5.971        
cufflinks 11.314     High High
cufflinks 11.516     High High
cufflinks 11.512     High High
cufflinks 7.165        
cufflinks 7.093     High  
cufflinks 9.838     High  
cufflinks 6.197        

0 Strain