Gene : Glyma.20G088600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23042:SF72 - TRANSCRIPTION FACTOR BHLH104-RELATED Genomic Order:  886
Name:  ? Glyma.20G088600 Secondary Identifier:  ? PAC:30521655
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G088600 0.5kb upstream 0.5kb upstream 5968 true Chr20: 32984474-32990441 Glycine max
Glyma.20G088600 0.5kb upstream 0.5kb upstream 500 false Chr20: 32989942-32990441 Glycine max
Glyma.20G088600 0.5kb downstream 0.5kb downstream 5968 true Chr20: 32983974-32989941 Glycine max
Glyma.20G088600 0.5kb downstream 0.5kb downstream 500 false Chr20: 32983974-32984473 Glycine max
Glyma.20G088600 1.0kb upstream 1.0kb upstream 6468 true Chr20: 32984474-32990941 Glycine max
Glyma.20G088600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 32989942-32990941 Glycine max
Glyma.20G088600 1.0kb downstream 1.0kb downstream 6468 true Chr20: 32983474-32989941 Glycine max
Glyma.20G088600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 32983474-32984473 Glycine max
Glyma.20G088600 2.0kb upstream 2.0kb upstream 7468 true Chr20: 32984474-32991941 Glycine max
Glyma.20G088600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 32989942-32991941 Glycine max
Glyma.20G088600 2.0kb downstream 2.0kb downstream 7468 true Chr20: 32982474-32989941 Glycine max
Glyma.20G088600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 32982474-32984473 Glycine max
Glyma.20G088600 5.0kb upstream 5.0kb upstream 10468 true Chr20: 32984474-32994941 Glycine max
Glyma.20G088600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 32989942-32994941 Glycine max
Glyma.20G088600 5.0kb downstream 5.0kb downstream 10468 true Chr20: 32979474-32989941 Glycine max
Glyma.20G088600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 32979474-32984473 Glycine max
Glyma.20G088600 10.0kb upstream 10.0kb upstream 15468 true Chr20: 32984474-32999941 Glycine max
Glyma.20G088600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 32989942-32999941 Glycine max
Glyma.20G088600 10.0kb downstream 10.0kb downstream 15468 true Chr20: 32974474-32989941 Glycine max
Glyma.20G088600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 32974474-32984473 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301152 5265 Fabidae View MSA
124074840 5270 Rosid View MSA
123739971 5271 Pentapetalae View MSA
122794387 5272 Eudicot View MSA
122050434 5273 Angiosperm View MSA
121311906 5274 Embryophyte View MSA
123427389 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.5521 0.0 65.6421    
cufflinks 15.1816 0.0 55.7222    
cufflinks 26.1743 0.0 88.7892 High High
cufflinks 14.5411 0.0 53.3755    
cufflinks 14.2518 0.0 52.5643   Low
cufflinks 24.5456 0.0 85.276 High High
cufflinks 14.7177 0.0 54.1982    
cufflinks 24.4579 0.0 83.7892 High High
cufflinks 20.0125 0.0 69.8688 High  
cufflinks 1.024        
cufflinks 3.529       High
cufflinks 1.693        
cufflinks 1.036        
cufflinks 1.066        
cufflinks 3.74       High
cufflinks 1.082        
cufflinks 1.061        
cufflinks 1.554        
cufflinks 1.077        
cufflinks 1.215        
cufflinks 2.966       High
cufflinks 1.105        
cufflinks 0.882       Low
cufflinks 2.574       High
cufflinks 1.199        
cufflinks 2.006        

0 Strain