Gene : Glyma.20G103800 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  1038
Name:  ? Glyma.20G103800 Secondary Identifier:  ? PAC:30520588
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G103800 0.5kb upstream 0.5kb upstream 4701 true Chr20: 34642577-34647277 Glycine max
Glyma.20G103800 0.5kb upstream 0.5kb upstream 500 false Chr20: 34642577-34643076 Glycine max
Glyma.20G103800 0.5kb downstream 0.5kb downstream 4701 true Chr20: 34643077-34647777 Glycine max
Glyma.20G103800 0.5kb downstream 0.5kb downstream 500 false Chr20: 34647278-34647777 Glycine max
Glyma.20G103800 1.0kb upstream 1.0kb upstream 5201 true Chr20: 34642077-34647277 Glycine max
Glyma.20G103800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 34642077-34643076 Glycine max
Glyma.20G103800 1.0kb downstream 1.0kb downstream 5201 true Chr20: 34643077-34648277 Glycine max
Glyma.20G103800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 34647278-34648277 Glycine max
Glyma.20G103800 2.0kb upstream 2.0kb upstream 6201 true Chr20: 34641077-34647277 Glycine max
Glyma.20G103800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 34641077-34643076 Glycine max
Glyma.20G103800 2.0kb downstream 2.0kb downstream 6201 true Chr20: 34643077-34649277 Glycine max
Glyma.20G103800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 34647278-34649277 Glycine max
Glyma.20G103800 5.0kb upstream 5.0kb upstream 9201 true Chr20: 34638077-34647277 Glycine max
Glyma.20G103800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 34638077-34643076 Glycine max
Glyma.20G103800 5.0kb downstream 5.0kb downstream 9201 true Chr20: 34643077-34652277 Glycine max
Glyma.20G103800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 34647278-34652277 Glycine max
Glyma.20G103800 10.0kb upstream 10.0kb upstream 14201 true Chr20: 34633077-34647277 Glycine max
Glyma.20G103800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 34633077-34643076 Glycine max
Glyma.20G103800 10.0kb downstream 10.0kb downstream 14201 true Chr20: 34643077-34657277 Glycine max
Glyma.20G103800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 34647278-34657277 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308338 5265 Fabidae View MSA
124061532 5270 Rosid View MSA
123741129 5271 Pentapetalae View MSA
122786104 5272 Eudicot View MSA
122045308 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.5641 0.0 30.9374   High
cufflinks 6.24637 0.0 17.2653    
cufflinks 3.58427 0.0 10.4767    
cufflinks 3.77851 0.0 11.0136    
cufflinks 2.17371 0.0 6.87263    
cufflinks 2.22231 0.0 6.99009    
cufflinks 2.98996 0.0 9.05073    
cufflinks 3.64207 0.0 10.6727    
cufflinks 2.4694 0.0 7.64881    
cufflinks 1.252        
cufflinks 0.744        
cufflinks 2.642        
cufflinks 1.033        
cufflinks 0.898        
cufflinks 1.071        
cufflinks 5.43       High
cufflinks 0.314       Low
cufflinks 3.194        
cufflinks 2.866        
cufflinks 9.239     High High
cufflinks 0.886        
cufflinks 7.498     High High
cufflinks 5.728       High
cufflinks 1.146        
cufflinks 6.378       High
cufflinks 0.692       Low

0 Strain