Gene : Glyma.20G105600 G. max Wm82.a2.v1
Defline:  (1 of 701) PF01535 - PPR repeat (PPR) Genomic Order:  1056
Name:  ? Glyma.20G105600 Secondary Identifier:  ? PAC:30519877
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G105600 0.5kb upstream 0.5kb upstream 2386 true Chr20: 34818550-34820935 Glycine max
Glyma.20G105600 0.5kb upstream 0.5kb upstream 500 false Chr20: 34820436-34820935 Glycine max
Glyma.20G105600 0.5kb downstream 0.5kb downstream 2386 true Chr20: 34818050-34820435 Glycine max
Glyma.20G105600 0.5kb downstream 0.5kb downstream 500 false Chr20: 34818050-34818549 Glycine max
Glyma.20G105600 1.0kb upstream 1.0kb upstream 2886 true Chr20: 34818550-34821435 Glycine max
Glyma.20G105600 1.0kb upstream 1.0kb upstream 1000 false Chr20: 34820436-34821435 Glycine max
Glyma.20G105600 1.0kb downstream 1.0kb downstream 2886 true Chr20: 34817550-34820435 Glycine max
Glyma.20G105600 1.0kb downstream 1.0kb downstream 1000 false Chr20: 34817550-34818549 Glycine max
Glyma.20G105600 2.0kb upstream 2.0kb upstream 3886 true Chr20: 34818550-34822435 Glycine max
Glyma.20G105600 2.0kb upstream 2.0kb upstream 2000 false Chr20: 34820436-34822435 Glycine max
Glyma.20G105600 2.0kb downstream 2.0kb downstream 3886 true Chr20: 34816550-34820435 Glycine max
Glyma.20G105600 2.0kb downstream 2.0kb downstream 2000 false Chr20: 34816550-34818549 Glycine max
Glyma.20G105600 5.0kb upstream 5.0kb upstream 6886 true Chr20: 34818550-34825435 Glycine max
Glyma.20G105600 5.0kb upstream 5.0kb upstream 5000 false Chr20: 34820436-34825435 Glycine max
Glyma.20G105600 5.0kb downstream 5.0kb downstream 6886 true Chr20: 34813550-34820435 Glycine max
Glyma.20G105600 5.0kb downstream 5.0kb downstream 5000 false Chr20: 34813550-34818549 Glycine max
Glyma.20G105600 10.0kb upstream 10.0kb upstream 11886 true Chr20: 34818550-34830435 Glycine max
Glyma.20G105600 10.0kb upstream 10.0kb upstream 10000 false Chr20: 34820436-34830435 Glycine max
Glyma.20G105600 10.0kb downstream 10.0kb downstream 11886 true Chr20: 34808550-34820435 Glycine max
Glyma.20G105600 10.0kb downstream 10.0kb downstream 10000 false Chr20: 34808550-34818549 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302013 5265 Fabidae View MSA
124063898 5270 Rosid View MSA
123736801 5271 Pentapetalae View MSA
122790461 5272 Eudicot View MSA
122047687 5273 Angiosperm View MSA
121347538 5274 Embryophyte View MSA
123380566 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.50297 0.0 13.2304   High
cufflinks 3.77149 0.0 11.3871   High
cufflinks 1.09176 0.0 3.84105    
cufflinks 1.58203 0.0 5.36963    
cufflinks 1.00061 0.0 3.53539    
cufflinks 0.573306 0.0 2.10341   Low
cufflinks 2.06279 0.0 6.73973    
cufflinks 1.83723 0.0 6.12293    
cufflinks 0.986805 0.0 3.49453    
cufflinks 1.256        
cufflinks 0.089       Low
cufflinks 2.059        
cufflinks 0.763        
cufflinks 0.593        
cufflinks 0.251        
cufflinks 7.193     High High
cufflinks 0.217        
cufflinks 2.343        
cufflinks 3.753        
cufflinks 11.224     High High
cufflinks 0.06     Low Low
cufflinks 9.398     High High
cufflinks 5.678        
cufflinks 0.07       Low
cufflinks 8.774     High High
cufflinks 0.099       Low

0 Strain