Gene : Glyma.20G162800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12802:SF49 - PROTEIN REVEILLE 3-RELATED Genomic Order:  1628
Name:  ? Glyma.20G162800 Secondary Identifier:  ? PAC:30522964
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G162800 0.5kb upstream 0.5kb upstream 6729 true Chr20: 40037989-40044717 Glycine max
Glyma.20G162800 0.5kb upstream 0.5kb upstream 500 false Chr20: 40044218-40044717 Glycine max
Glyma.20G162800 0.5kb downstream 0.5kb downstream 6729 true Chr20: 40037489-40044217 Glycine max
Glyma.20G162800 0.5kb downstream 0.5kb downstream 500 false Chr20: 40037489-40037988 Glycine max
Glyma.20G162800 1.0kb upstream 1.0kb upstream 7229 true Chr20: 40037989-40045217 Glycine max
Glyma.20G162800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 40044218-40045217 Glycine max
Glyma.20G162800 1.0kb downstream 1.0kb downstream 7229 true Chr20: 40036989-40044217 Glycine max
Glyma.20G162800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 40036989-40037988 Glycine max
Glyma.20G162800 2.0kb upstream 2.0kb upstream 8229 true Chr20: 40037989-40046217 Glycine max
Glyma.20G162800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 40044218-40046217 Glycine max
Glyma.20G162800 2.0kb downstream 2.0kb downstream 8229 true Chr20: 40035989-40044217 Glycine max
Glyma.20G162800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 40035989-40037988 Glycine max
Glyma.20G162800 5.0kb upstream 5.0kb upstream 11229 true Chr20: 40037989-40049217 Glycine max
Glyma.20G162800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 40044218-40049217 Glycine max
Glyma.20G162800 5.0kb downstream 5.0kb downstream 11229 true Chr20: 40032989-40044217 Glycine max
Glyma.20G162800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 40032989-40037988 Glycine max
Glyma.20G162800 10.0kb upstream 10.0kb upstream 16229 true Chr20: 40037989-40054217 Glycine max
Glyma.20G162800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 40044218-40054217 Glycine max
Glyma.20G162800 10.0kb downstream 10.0kb downstream 16229 true Chr20: 40027989-40044217 Glycine max
Glyma.20G162800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 40027989-40037988 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122253530 5265 Fabidae View MSA
124066393 5270 Rosid View MSA
123747099 5271 Pentapetalae View MSA
122797418 5272 Eudicot View MSA
122043190 5273 Angiosperm View MSA
121350765 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.76545 0.0 20.2784    
cufflinks 3.39324 0.0 16.7519    
cufflinks 42.4929 0.0 164.89 High High
cufflinks 10.4372 0.0 37.9231    
cufflinks 1.43017 0.0 8.91757    
cufflinks 0.377807 0.0 1.85195   Low
cufflinks 2.31012 0.0 12.6374    
cufflinks 6.08997 0.0 23.9692    
cufflinks 1.66181 0.0 10.9078    
cufflinks 0.1        
cufflinks 0.069        
cufflinks 3.722       High
cufflinks 0.132        
cufflinks 0.15        
cufflinks 0.141        
cufflinks 0.35        
cufflinks 0.053     Low Low
cufflinks 4.239       High
cufflinks 0.199        
cufflinks 0.634        
cufflinks 0.081        
cufflinks 0.7        
cufflinks 0.6        
cufflinks 0.086        
cufflinks 0.515        
cufflinks 0.064     Low Low

0 Strain