Gene : Glyma.20G150100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23418:SF4 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 Genomic Order:  1501
Name:  ? Glyma.20G150100 Secondary Identifier:  ? PAC:30520426
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-4361 Glycine max pathologic  
Gmax PWY-7270 Glycine max pathologic  
Gmax PWY-7528 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G150100 0.5kb upstream 0.5kb upstream 2407 true Chr20: 38907426-38909832 Glycine max
Glyma.20G150100 0.5kb upstream 0.5kb upstream 500 false Chr20: 38907426-38907925 Glycine max
Glyma.20G150100 0.5kb downstream 0.5kb downstream 2407 true Chr20: 38907926-38910332 Glycine max
Glyma.20G150100 0.5kb downstream 0.5kb downstream 500 false Chr20: 38909833-38910332 Glycine max
Glyma.20G150100 1.0kb upstream 1.0kb upstream 2907 true Chr20: 38906926-38909832 Glycine max
Glyma.20G150100 1.0kb upstream 1.0kb upstream 1000 false Chr20: 38906926-38907925 Glycine max
Glyma.20G150100 1.0kb downstream 1.0kb downstream 2907 true Chr20: 38907926-38910832 Glycine max
Glyma.20G150100 1.0kb downstream 1.0kb downstream 1000 false Chr20: 38909833-38910832 Glycine max
Glyma.20G150100 2.0kb upstream 2.0kb upstream 3907 true Chr20: 38905926-38909832 Glycine max
Glyma.20G150100 2.0kb upstream 2.0kb upstream 2000 false Chr20: 38905926-38907925 Glycine max
Glyma.20G150100 2.0kb downstream 2.0kb downstream 3907 true Chr20: 38907926-38911832 Glycine max
Glyma.20G150100 2.0kb downstream 2.0kb downstream 2000 false Chr20: 38909833-38911832 Glycine max
Glyma.20G150100 5.0kb upstream 5.0kb upstream 6907 true Chr20: 38902926-38909832 Glycine max
Glyma.20G150100 5.0kb upstream 5.0kb upstream 5000 false Chr20: 38902926-38907925 Glycine max
Glyma.20G150100 5.0kb downstream 5.0kb downstream 6907 true Chr20: 38907926-38914832 Glycine max
Glyma.20G150100 5.0kb downstream 5.0kb downstream 5000 false Chr20: 38909833-38914832 Glycine max
Glyma.20G150100 10.0kb upstream 10.0kb upstream 11907 true Chr20: 38897926-38909832 Glycine max
Glyma.20G150100 10.0kb upstream 10.0kb upstream 10000 false Chr20: 38897926-38907925 Glycine max
Glyma.20G150100 10.0kb downstream 10.0kb downstream 11907 true Chr20: 38907926-38919832 Glycine max
Glyma.20G150100 10.0kb downstream 10.0kb downstream 10000 false Chr20: 38909833-38919832 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308555 5265 Fabidae View MSA
124070684 5270 Rosid View MSA
123741202 5271 Pentapetalae View MSA
122793339 5272 Eudicot View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 79.4075 0.0 222.632 High High
cufflinks 22.5902 0.0 60.5305 High  
cufflinks 13.4869 0.0 37.0421    
cufflinks 37.678 0.0 100.801 High  
cufflinks 4.648 0.0 14.633    
cufflinks 1.81593 0.0 6.38238   Low
cufflinks 11.0815 0.0 31.1684    
cufflinks 27.4018 0.0 73.1329 High  
cufflinks 2.00742 0.0 6.99622   Low
cufflinks 4.921        
cufflinks 0.04     Low Low
cufflinks 10.233     High  
cufflinks 0.284        
cufflinks 0.128       Low
cufflinks 0.08       Low
cufflinks 12.53     High  
cufflinks 1.657        
cufflinks 15.99     High  
cufflinks 5.478        
cufflinks 16.038     High  
cufflinks 0.128       Low
cufflinks 21.009     High High
cufflinks 20.869     High High
cufflinks 0.132       Low
cufflinks 19.716     High High
cufflinks 1.001        

0 Strain