Gene : Glyma.20G183000 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21600 - RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B Genomic Order:  1830
Name:  ? Glyma.20G183000 Secondary Identifier:  ? PAC:30522181
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G183000 0.5kb upstream 0.5kb upstream 4474 true Chr20: 42107275-42111748 Glycine max
Glyma.20G183000 0.5kb upstream 0.5kb upstream 500 false Chr20: 42111249-42111748 Glycine max
Glyma.20G183000 0.5kb downstream 0.5kb downstream 4474 true Chr20: 42106775-42111248 Glycine max
Glyma.20G183000 0.5kb downstream 0.5kb downstream 500 false Chr20: 42106775-42107274 Glycine max
Glyma.20G183000 1.0kb upstream 1.0kb upstream 4974 true Chr20: 42107275-42112248 Glycine max
Glyma.20G183000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 42111249-42112248 Glycine max
Glyma.20G183000 1.0kb downstream 1.0kb downstream 4974 true Chr20: 42106275-42111248 Glycine max
Glyma.20G183000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 42106275-42107274 Glycine max
Glyma.20G183000 2.0kb upstream 2.0kb upstream 5974 true Chr20: 42107275-42113248 Glycine max
Glyma.20G183000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 42111249-42113248 Glycine max
Glyma.20G183000 2.0kb downstream 2.0kb downstream 5974 true Chr20: 42105275-42111248 Glycine max
Glyma.20G183000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 42105275-42107274 Glycine max
Glyma.20G183000 5.0kb upstream 5.0kb upstream 8974 true Chr20: 42107275-42116248 Glycine max
Glyma.20G183000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 42111249-42116248 Glycine max
Glyma.20G183000 5.0kb downstream 5.0kb downstream 8974 true Chr20: 42102275-42111248 Glycine max
Glyma.20G183000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 42102275-42107274 Glycine max
Glyma.20G183000 10.0kb upstream 10.0kb upstream 13974 true Chr20: 42107275-42121248 Glycine max
Glyma.20G183000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 42111249-42121248 Glycine max
Glyma.20G183000 10.0kb downstream 10.0kb downstream 13974 true Chr20: 42097275-42111248 Glycine max
Glyma.20G183000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 42097275-42107274 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121606912 5273 Angiosperm Singleton cluster - no MSA
122238024 5265 Fabidae Singleton cluster - no MSA
123983505 5270 Rosid Singleton cluster - no MSA
123559112 5271 Pentapetalae Singleton cluster - no MSA
122593919 5272 Eudicot Singleton cluster - no MSA
120879197 5274 Embryophyte Singleton cluster - no MSA
123427017 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.687944 0.0 2.58041    
cufflinks 0.425311 0.0 1.62995    
cufflinks 0.942168 0.0 3.48537    
cufflinks 0.453504 0.0 1.73344    
cufflinks 0.188038 0.0 0.743355 Low  
cufflinks 0.0426519 0.0 0.182786 Low Low
cufflinks 0.706699 0.0 2.64473    
cufflinks 0.649044 0.0 2.43918    
cufflinks 0.739339 0.0 2.761    
cufflinks 0.139        
cufflinks 0.057       Low
cufflinks 0.998        
cufflinks 0.088     Low  
cufflinks 0.119        
cufflinks 2.783       High
cufflinks 0.596        
cufflinks 0.059     Low Low
cufflinks 1.052       High
cufflinks 0.516        
cufflinks 0.776        
cufflinks 0.078       Low
cufflinks 0.771        
cufflinks 0.744        
cufflinks 0.072       Low
cufflinks 0.64        
cufflinks 0.108        

0 Strain