Gene : Glyma.20G178200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31394:SF1 - TRANSMEMBRANE PROTEIN 199 Genomic Order:  1782
Name:  ? Glyma.20G178200 Secondary Identifier:  ? PAC:30521542
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G178200 0.5kb upstream 0.5kb upstream 4253 true Chr20: 41562835-41567087 Glycine max
Glyma.20G178200 0.5kb upstream 0.5kb upstream 500 false Chr20: 41562835-41563334 Glycine max
Glyma.20G178200 0.5kb downstream 0.5kb downstream 4253 true Chr20: 41563335-41567587 Glycine max
Glyma.20G178200 0.5kb downstream 0.5kb downstream 500 false Chr20: 41567088-41567587 Glycine max
Glyma.20G178200 1.0kb upstream 1.0kb upstream 4753 true Chr20: 41562335-41567087 Glycine max
Glyma.20G178200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 41562335-41563334 Glycine max
Glyma.20G178200 1.0kb downstream 1.0kb downstream 4753 true Chr20: 41563335-41568087 Glycine max
Glyma.20G178200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 41567088-41568087 Glycine max
Glyma.20G178200 2.0kb upstream 2.0kb upstream 5753 true Chr20: 41561335-41567087 Glycine max
Glyma.20G178200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 41561335-41563334 Glycine max
Glyma.20G178200 2.0kb downstream 2.0kb downstream 5753 true Chr20: 41563335-41569087 Glycine max
Glyma.20G178200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 41567088-41569087 Glycine max
Glyma.20G178200 5.0kb upstream 5.0kb upstream 8753 true Chr20: 41558335-41567087 Glycine max
Glyma.20G178200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 41558335-41563334 Glycine max
Glyma.20G178200 5.0kb downstream 5.0kb downstream 8753 true Chr20: 41563335-41572087 Glycine max
Glyma.20G178200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 41567088-41572087 Glycine max
Glyma.20G178200 10.0kb upstream 10.0kb upstream 13753 true Chr20: 41553335-41567087 Glycine max
Glyma.20G178200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 41553335-41563334 Glycine max
Glyma.20G178200 10.0kb downstream 10.0kb downstream 13753 true Chr20: 41563335-41577087 Glycine max
Glyma.20G178200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 41567088-41577087 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308398 5265 Fabidae View MSA
124060420 5270 Rosid View MSA
123736376 5271 Pentapetalae View MSA
122786410 5272 Eudicot View MSA
122047904 5273 Angiosperm View MSA
121346393 5274 Embryophyte View MSA
123426086 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.77418 0.0 30.2161    
cufflinks 6.46359 0.0 24.2882   Low
cufflinks 8.24315 0.0 29.1564    
cufflinks 9.00246 0.0 30.7511    
cufflinks 11.0498 0.0 41.7023    
cufflinks 11.9656 0.0 44.5531   High
cufflinks 6.92208 0.0 25.6121   Low
cufflinks 9.45792 0.0 31.9139    
cufflinks 10.5826 0.0 35.897    
cufflinks 1.364        
cufflinks 1.084        
cufflinks 1.482        
cufflinks 1.893       High
cufflinks 1.963       High
cufflinks 0.965       Low
cufflinks 1.151        
cufflinks 1.065        
cufflinks 1.596       High
cufflinks 1.386        
cufflinks 1.077        
cufflinks 1.006       Low
cufflinks 1.156        
cufflinks 1.463        
cufflinks 1.249        
cufflinks 1.095        
cufflinks 1.289        

0 Strain