Gene : Glyma.20G170300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22603:SF39 - CHOLINE KINASE 1-RELATED Genomic Order:  1703
Name:  ? Glyma.20G170300 Secondary Identifier:  ? PAC:30519927
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-3385 Glycine max pathologic  
Gmax PWY4FS-6 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G170300 0.5kb upstream 0.5kb upstream 5173 true Chr20: 40813677-40818849 Glycine max
Glyma.20G170300 0.5kb upstream 0.5kb upstream 500 false Chr20: 40813677-40814176 Glycine max
Glyma.20G170300 0.5kb downstream 0.5kb downstream 5173 true Chr20: 40814177-40819349 Glycine max
Glyma.20G170300 0.5kb downstream 0.5kb downstream 500 false Chr20: 40818850-40819349 Glycine max
Glyma.20G170300 1.0kb upstream 1.0kb upstream 5673 true Chr20: 40813177-40818849 Glycine max
Glyma.20G170300 1.0kb upstream 1.0kb upstream 1000 false Chr20: 40813177-40814176 Glycine max
Glyma.20G170300 1.0kb downstream 1.0kb downstream 5673 true Chr20: 40814177-40819849 Glycine max
Glyma.20G170300 1.0kb downstream 1.0kb downstream 1000 false Chr20: 40818850-40819849 Glycine max
Glyma.20G170300 2.0kb upstream 2.0kb upstream 6673 true Chr20: 40812177-40818849 Glycine max
Glyma.20G170300 2.0kb upstream 2.0kb upstream 2000 false Chr20: 40812177-40814176 Glycine max
Glyma.20G170300 2.0kb downstream 2.0kb downstream 6673 true Chr20: 40814177-40820849 Glycine max
Glyma.20G170300 2.0kb downstream 2.0kb downstream 2000 false Chr20: 40818850-40820849 Glycine max
Glyma.20G170300 5.0kb upstream 5.0kb upstream 9673 true Chr20: 40809177-40818849 Glycine max
Glyma.20G170300 5.0kb upstream 5.0kb upstream 5000 false Chr20: 40809177-40814176 Glycine max
Glyma.20G170300 5.0kb downstream 5.0kb downstream 9673 true Chr20: 40814177-40823849 Glycine max
Glyma.20G170300 5.0kb downstream 5.0kb downstream 5000 false Chr20: 40818850-40823849 Glycine max
Glyma.20G170300 10.0kb upstream 10.0kb upstream 14673 true Chr20: 40804177-40818849 Glycine max
Glyma.20G170300 10.0kb upstream 10.0kb upstream 10000 false Chr20: 40804177-40814176 Glycine max
Glyma.20G170300 10.0kb downstream 10.0kb downstream 14673 true Chr20: 40814177-40828849 Glycine max
Glyma.20G170300 10.0kb downstream 10.0kb downstream 10000 false Chr20: 40818850-40828849 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311650 5265 Fabidae View MSA
124069180 5270 Rosid View MSA
123746925 5271 Pentapetalae View MSA
122797485 5272 Eudicot View MSA
122047896 5273 Angiosperm View MSA
121347088 5274 Embryophyte View MSA
123426626 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.10589 0.0 16.1902    
cufflinks 1.88767 0.0 7.10049   Low
cufflinks 32.6787 0.0 100.828 High High
cufflinks 12.1943 0.0 37.2407    
cufflinks 3.95884 0.0 11.984    
cufflinks 29.7165 0.0 104.568 High High
cufflinks 1.67168 0.0 6.53385   Low
cufflinks 5.53093 0.0 19.5838    
cufflinks 5.67974 0.0 23.3555    
cufflinks 9.822     High High
cufflinks 3.081        
cufflinks 6.893        
cufflinks 2.079        
cufflinks 0.315       Low
cufflinks 2.094        
cufflinks 1.124        
cufflinks 54.502     High High
cufflinks 2.389        
cufflinks 0.902        
cufflinks 0.597       Low
cufflinks 3.272        
cufflinks 1.014        
cufflinks 1.818        
cufflinks 1.583        
cufflinks 1.151        
cufflinks 6.968     High  

0 Strain