Gene : Glyma.20G171200 G. max Wm82.a2.v1
Defline:  (1 of 11) PF00076//PF00658 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Poly-adenylate binding protein, unique domain (PABP) Genomic Order:  1712
Name:  ? Glyma.20G171200 Secondary Identifier:  ? PAC:30521781
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G171200 0.5kb upstream 0.5kb upstream 4807 true Chr20: 40896160-40900966 Glycine max
Glyma.20G171200 0.5kb upstream 0.5kb upstream 500 false Chr20: 40900467-40900966 Glycine max
Glyma.20G171200 0.5kb downstream 0.5kb downstream 4807 true Chr20: 40895660-40900466 Glycine max
Glyma.20G171200 0.5kb downstream 0.5kb downstream 500 false Chr20: 40895660-40896159 Glycine max
Glyma.20G171200 1.0kb upstream 1.0kb upstream 5307 true Chr20: 40896160-40901466 Glycine max
Glyma.20G171200 1.0kb upstream 1.0kb upstream 1000 false Chr20: 40900467-40901466 Glycine max
Glyma.20G171200 1.0kb downstream 1.0kb downstream 5307 true Chr20: 40895160-40900466 Glycine max
Glyma.20G171200 1.0kb downstream 1.0kb downstream 1000 false Chr20: 40895160-40896159 Glycine max
Glyma.20G171200 2.0kb upstream 2.0kb upstream 6307 true Chr20: 40896160-40902466 Glycine max
Glyma.20G171200 2.0kb upstream 2.0kb upstream 2000 false Chr20: 40900467-40902466 Glycine max
Glyma.20G171200 2.0kb downstream 2.0kb downstream 6307 true Chr20: 40894160-40900466 Glycine max
Glyma.20G171200 2.0kb downstream 2.0kb downstream 2000 false Chr20: 40894160-40896159 Glycine max
Glyma.20G171200 5.0kb upstream 5.0kb upstream 9307 true Chr20: 40896160-40905466 Glycine max
Glyma.20G171200 5.0kb upstream 5.0kb upstream 5000 false Chr20: 40900467-40905466 Glycine max
Glyma.20G171200 5.0kb downstream 5.0kb downstream 9307 true Chr20: 40891160-40900466 Glycine max
Glyma.20G171200 5.0kb downstream 5.0kb downstream 5000 false Chr20: 40891160-40896159 Glycine max
Glyma.20G171200 10.0kb upstream 10.0kb upstream 14307 true Chr20: 40896160-40910466 Glycine max
Glyma.20G171200 10.0kb upstream 10.0kb upstream 10000 false Chr20: 40900467-40910466 Glycine max
Glyma.20G171200 10.0kb downstream 10.0kb downstream 14307 true Chr20: 40886160-40900466 Glycine max
Glyma.20G171200 10.0kb downstream 10.0kb downstream 10000 false Chr20: 40886160-40896159 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308553 5265 Fabidae View MSA
124064965 5270 Rosid View MSA
123746752 5271 Pentapetalae View MSA
122787026 5272 Eudicot View MSA
122045598 5273 Angiosperm View MSA
121310471 5274 Embryophyte View MSA
123428043 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.36198 0.0 12.248   Low
cufflinks 9.84126 0.0 26.3136    
cufflinks 6.77116 0.0 18.3587   Low
cufflinks 14.1045 0.0 37.6824    
cufflinks 21.9034 0.0 59.6053 High  
cufflinks 18.7308 0.0 50.5304    
cufflinks 27.7432 0.0 76.8422 High High
cufflinks 10.6856 0.0 28.5265    
cufflinks 13.549 0.0 36.1764    
cufflinks 8.739     High  
cufflinks 1.628       Low
cufflinks 6.017        
cufflinks 22.298     High High
cufflinks 30.858     High High
cufflinks 1.877        
cufflinks 2.828        
cufflinks 4.497        
cufflinks 7.67     High  
cufflinks 10.913     High High
cufflinks 1.616       Low
cufflinks 2.673        
cufflinks 1.976        
cufflinks 3.978        
cufflinks 3.067        
cufflinks 2.024        
cufflinks 3.627        

0 Strain