Gene : Glyma.20G193800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR34373:SF2 - SHUGOSHIN C TERMINUS Genomic Order:  1938
Name:  ? Glyma.20G193800 Secondary Identifier:  ? PAC:30521842
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G193800 0.5kb upstream 0.5kb upstream 8449 true Chr20: 43252418-43260866 Glycine max
Glyma.20G193800 0.5kb upstream 0.5kb upstream 500 false Chr20: 43260367-43260866 Glycine max
Glyma.20G193800 0.5kb downstream 0.5kb downstream 8449 true Chr20: 43251918-43260366 Glycine max
Glyma.20G193800 0.5kb downstream 0.5kb downstream 500 false Chr20: 43251918-43252417 Glycine max
Glyma.20G193800 1.0kb upstream 1.0kb upstream 8949 true Chr20: 43252418-43261366 Glycine max
Glyma.20G193800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 43260367-43261366 Glycine max
Glyma.20G193800 1.0kb downstream 1.0kb downstream 8949 true Chr20: 43251418-43260366 Glycine max
Glyma.20G193800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 43251418-43252417 Glycine max
Glyma.20G193800 2.0kb upstream 2.0kb upstream 9949 true Chr20: 43252418-43262366 Glycine max
Glyma.20G193800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 43260367-43262366 Glycine max
Glyma.20G193800 2.0kb downstream 2.0kb downstream 9949 true Chr20: 43250418-43260366 Glycine max
Glyma.20G193800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 43250418-43252417 Glycine max
Glyma.20G193800 5.0kb upstream 5.0kb upstream 12949 true Chr20: 43252418-43265366 Glycine max
Glyma.20G193800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 43260367-43265366 Glycine max
Glyma.20G193800 5.0kb downstream 5.0kb downstream 12949 true Chr20: 43247418-43260366 Glycine max
Glyma.20G193800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 43247418-43252417 Glycine max
Glyma.20G193800 10.0kb upstream 10.0kb upstream 17949 true Chr20: 43252418-43270366 Glycine max
Glyma.20G193800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 43260367-43270366 Glycine max
Glyma.20G193800 10.0kb downstream 10.0kb downstream 17949 true Chr20: 43242418-43260366 Glycine max
Glyma.20G193800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 43242418-43252417 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028020 5273 Angiosperm View MSA
122306201 5265 Fabidae View MSA
124074097 5270 Rosid View MSA
123746067 5271 Pentapetalae View MSA
122795330 5272 Eudicot View MSA
121349389 5274 Embryophyte View MSA
123381292 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.054739 0.0 0.222751 Low Low
cufflinks 4.88743 0.0 16.7695   High
cufflinks 0.571232 0.0 3.41243    
cufflinks 1.42742 0.0 7.14894    
cufflinks 2.47362 0.0 10.5949    
cufflinks 2.3053 0.0 10.2439    
cufflinks 1.73575 0.0 8.29416    
cufflinks 1.96252 0.0 8.90247    
cufflinks 2.56142 0.0 8.40508    
cufflinks 0.334        
cufflinks 0.236        
cufflinks 0.376        
cufflinks 0.884        
cufflinks 0.944        
cufflinks 0.145       Low
cufflinks 1.335       High
cufflinks 0.15       Low
cufflinks 0.322        
cufflinks 0.977        
cufflinks 1.011        
cufflinks 0.293        
cufflinks 1.171       High
cufflinks 1.275       High
cufflinks 0.265        
cufflinks 1.124       High
cufflinks 0.344        

0 Strain