Gene : Glyma.20G197500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12856 - TRANSCRIPTION INITIATION FACTOR IIH-RELATED Genomic Order:  1975
Name:  ? Glyma.20G197500 Secondary Identifier:  ? PAC:30521530
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G197500 0.5kb upstream 0.5kb upstream 13220 true Chr20: 43490717-43503936 Glycine max
Glyma.20G197500 0.5kb upstream 0.5kb upstream 500 false Chr20: 43490717-43491216 Glycine max
Glyma.20G197500 0.5kb downstream 0.5kb downstream 13220 true Chr20: 43491217-43504436 Glycine max
Glyma.20G197500 0.5kb downstream 0.5kb downstream 500 false Chr20: 43503937-43504436 Glycine max
Glyma.20G197500 1.0kb upstream 1.0kb upstream 13720 true Chr20: 43490217-43503936 Glycine max
Glyma.20G197500 1.0kb upstream 1.0kb upstream 1000 false Chr20: 43490217-43491216 Glycine max
Glyma.20G197500 1.0kb downstream 1.0kb downstream 13720 true Chr20: 43491217-43504936 Glycine max
Glyma.20G197500 1.0kb downstream 1.0kb downstream 1000 false Chr20: 43503937-43504936 Glycine max
Glyma.20G197500 2.0kb upstream 2.0kb upstream 14720 true Chr20: 43489217-43503936 Glycine max
Glyma.20G197500 2.0kb upstream 2.0kb upstream 2000 false Chr20: 43489217-43491216 Glycine max
Glyma.20G197500 2.0kb downstream 2.0kb downstream 14720 true Chr20: 43491217-43505936 Glycine max
Glyma.20G197500 2.0kb downstream 2.0kb downstream 2000 false Chr20: 43503937-43505936 Glycine max
Glyma.20G197500 5.0kb upstream 5.0kb upstream 17720 true Chr20: 43486217-43503936 Glycine max
Glyma.20G197500 5.0kb upstream 5.0kb upstream 5000 false Chr20: 43486217-43491216 Glycine max
Glyma.20G197500 5.0kb downstream 5.0kb downstream 17720 true Chr20: 43491217-43508936 Glycine max
Glyma.20G197500 5.0kb downstream 5.0kb downstream 5000 false Chr20: 43503937-43508936 Glycine max
Glyma.20G197500 10.0kb upstream 10.0kb upstream 22720 true Chr20: 43481217-43503936 Glycine max
Glyma.20G197500 10.0kb upstream 10.0kb upstream 10000 false Chr20: 43481217-43491216 Glycine max
Glyma.20G197500 10.0kb downstream 10.0kb downstream 22720 true Chr20: 43491217-43513936 Glycine max
Glyma.20G197500 10.0kb downstream 10.0kb downstream 10000 false Chr20: 43503937-43513936 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299700 5265 Fabidae View MSA
124068692 5270 Rosid View MSA
123738244 5271 Pentapetalae View MSA
122787782 5272 Eudicot View MSA
122047682 5273 Angiosperm View MSA
121347472 5274 Embryophyte View MSA
123425427 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.87246 0.0 24.4844    
cufflinks 6.26867 0.0 25.0614    
cufflinks 6.97306 0.0 30.881    
cufflinks 6.70143 0.0 30.4981    
cufflinks 6.5873 0.0 29.4516    
cufflinks 5.99648 0.0 24.6101    
cufflinks 8.53242 0.0 32.7602   High
cufflinks 5.97503 0.0 26.8965    
cufflinks 6.16747 0.0 28.8379    
cufflinks 0.403        
cufflinks 0.303        
cufflinks 0.47       High
cufflinks 0.462       High
cufflinks 0.538       High
cufflinks 0.291       Low
cufflinks 0.351        
cufflinks 0.349        
cufflinks 0.526       High
cufflinks 0.397        
cufflinks 0.323        
cufflinks 0.32        
cufflinks 0.318        
cufflinks 0.304        
cufflinks 0.324        
cufflinks 0.312        
cufflinks 0.383        

0 Strain