Gene : Glyma.20G189800 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR11709:SF94 - LACCASE-15 Genomic Order:  1898
Name:  ? Glyma.20G189800 Secondary Identifier:  ? PAC:30522762
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5466 Glycine max pathologic  
Gmax PWY-6824 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G189800 0.5kb upstream 0.5kb upstream 1044 true Chr20: 42834930-42835973 Glycine max
Glyma.20G189800 0.5kb upstream 0.5kb upstream 500 false Chr20: 42835474-42835973 Glycine max
Glyma.20G189800 0.5kb downstream 0.5kb downstream 1044 true Chr20: 42834430-42835473 Glycine max
Glyma.20G189800 0.5kb downstream 0.5kb downstream 500 false Chr20: 42834430-42834929 Glycine max
Glyma.20G189800 1.0kb upstream 1.0kb upstream 1544 true Chr20: 42834930-42836473 Glycine max
Glyma.20G189800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 42835474-42836473 Glycine max
Glyma.20G189800 1.0kb downstream 1.0kb downstream 1544 true Chr20: 42833930-42835473 Glycine max
Glyma.20G189800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 42833930-42834929 Glycine max
Glyma.20G189800 2.0kb upstream 2.0kb upstream 2544 true Chr20: 42834930-42837473 Glycine max
Glyma.20G189800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 42835474-42837473 Glycine max
Glyma.20G189800 2.0kb downstream 2.0kb downstream 2544 true Chr20: 42832930-42835473 Glycine max
Glyma.20G189800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 42832930-42834929 Glycine max
Glyma.20G189800 5.0kb upstream 5.0kb upstream 5544 true Chr20: 42834930-42840473 Glycine max
Glyma.20G189800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 42835474-42840473 Glycine max
Glyma.20G189800 5.0kb downstream 5.0kb downstream 5544 true Chr20: 42829930-42835473 Glycine max
Glyma.20G189800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 42829930-42834929 Glycine max
Glyma.20G189800 10.0kb upstream 10.0kb upstream 10544 true Chr20: 42834930-42845473 Glycine max
Glyma.20G189800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 42835474-42845473 Glycine max
Glyma.20G189800 10.0kb downstream 10.0kb downstream 10544 true Chr20: 42824930-42835473 Glycine max
Glyma.20G189800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 42824930-42834929 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315028 5265 Fabidae View MSA
124074925 5270 Rosid View MSA
123753088 5271 Pentapetalae View MSA
122795935 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.189675 0.0 5.2273 Low High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0977512 0.0 3.32099 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0786903 0.0 3.12825 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0894542 0.0 2.88511 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.072     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.18       High
cufflinks 0.095        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.091     Low  
cufflinks 0.068     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low Low
cufflinks 0.0     Not Expressed Not Expressed

0 Strain