Gene : Glyma.20G222000 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31100:SF3 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 19-RELATED Genomic Order:  2220
Name:  ? Glyma.20G222000 Secondary Identifier:  ? PAC:30522771
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G222000 0.5kb upstream 0.5kb upstream 1334 true Chr20: 45695377-45696710 Glycine max
Glyma.20G222000 0.5kb upstream 0.5kb upstream 500 false Chr20: 45696211-45696710 Glycine max
Glyma.20G222000 0.5kb downstream 0.5kb downstream 1334 true Chr20: 45694877-45696210 Glycine max
Glyma.20G222000 0.5kb downstream 0.5kb downstream 500 false Chr20: 45694877-45695376 Glycine max
Glyma.20G222000 1.0kb upstream 1.0kb upstream 1834 true Chr20: 45695377-45697210 Glycine max
Glyma.20G222000 1.0kb upstream 1.0kb upstream 1000 false Chr20: 45696211-45697210 Glycine max
Glyma.20G222000 1.0kb downstream 1.0kb downstream 1834 true Chr20: 45694377-45696210 Glycine max
Glyma.20G222000 1.0kb downstream 1.0kb downstream 1000 false Chr20: 45694377-45695376 Glycine max
Glyma.20G222000 2.0kb upstream 2.0kb upstream 2834 true Chr20: 45695377-45698210 Glycine max
Glyma.20G222000 2.0kb upstream 2.0kb upstream 2000 false Chr20: 45696211-45698210 Glycine max
Glyma.20G222000 2.0kb downstream 2.0kb downstream 2834 true Chr20: 45693377-45696210 Glycine max
Glyma.20G222000 2.0kb downstream 2.0kb downstream 2000 false Chr20: 45693377-45695376 Glycine max
Glyma.20G222000 5.0kb upstream 5.0kb upstream 5834 true Chr20: 45695377-45701210 Glycine max
Glyma.20G222000 5.0kb upstream 5.0kb upstream 5000 false Chr20: 45696211-45701210 Glycine max
Glyma.20G222000 5.0kb downstream 5.0kb downstream 5834 true Chr20: 45690377-45696210 Glycine max
Glyma.20G222000 5.0kb downstream 5.0kb downstream 5000 false Chr20: 45690377-45695376 Glycine max
Glyma.20G222000 10.0kb upstream 10.0kb upstream 10834 true Chr20: 45695377-45706210 Glycine max
Glyma.20G222000 10.0kb upstream 10.0kb upstream 10000 false Chr20: 45696211-45706210 Glycine max
Glyma.20G222000 10.0kb downstream 10.0kb downstream 10834 true Chr20: 45685377-45696210 Glycine max
Glyma.20G222000 10.0kb downstream 10.0kb downstream 10000 false Chr20: 45685377-45695376 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313202 5265 Fabidae View MSA
124071129 5270 Rosid View MSA
123751689 5271 Pentapetalae View MSA
122796160 5272 Eudicot View MSA
122048201 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.55779 0.0 12.1445    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0223185 0.0 0.105594 Low Low
cufflinks 0.085423 0.0 0.355824 Low Low
cufflinks 9.52651 0.0 28.0089    
cufflinks 9.14047 0.0 27.3672    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.442949 0.0 1.71888    
cufflinks 12.2304 0.0 35.4065    
cufflinks 0.101        
cufflinks 19.038     High  
cufflinks 0.146        
cufflinks 3.447        
cufflinks 1.706        
cufflinks 12.6     High  
cufflinks 0.022     Low Low
cufflinks 10.331     High  
cufflinks 0.099     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low Low
cufflinks 53.271     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 22.292     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 19.581     High  

0 Strain