Gene : Glyma.20G238400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22847:SF424 - TOPLESS-RELATED PROTEIN 2-RELATED Genomic Order:  2384
Name:  ? Glyma.20G238400 Secondary Identifier:  ? PAC:30521028
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G238400 0.5kb upstream 0.5kb upstream 10396 true Chr20: 47010815-47021210 Glycine max
Glyma.20G238400 0.5kb upstream 0.5kb upstream 500 false Chr20: 47010815-47011314 Glycine max
Glyma.20G238400 0.5kb downstream 0.5kb downstream 10396 true Chr20: 47011315-47021710 Glycine max
Glyma.20G238400 0.5kb downstream 0.5kb downstream 500 false Chr20: 47021211-47021710 Glycine max
Glyma.20G238400 1.0kb upstream 1.0kb upstream 10896 true Chr20: 47010315-47021210 Glycine max
Glyma.20G238400 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47010315-47011314 Glycine max
Glyma.20G238400 1.0kb downstream 1.0kb downstream 10896 true Chr20: 47011315-47022210 Glycine max
Glyma.20G238400 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47021211-47022210 Glycine max
Glyma.20G238400 2.0kb upstream 2.0kb upstream 11896 true Chr20: 47009315-47021210 Glycine max
Glyma.20G238400 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47009315-47011314 Glycine max
Glyma.20G238400 2.0kb downstream 2.0kb downstream 11896 true Chr20: 47011315-47023210 Glycine max
Glyma.20G238400 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47021211-47023210 Glycine max
Glyma.20G238400 5.0kb upstream 5.0kb upstream 14896 true Chr20: 47006315-47021210 Glycine max
Glyma.20G238400 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47006315-47011314 Glycine max
Glyma.20G238400 5.0kb downstream 5.0kb downstream 14896 true Chr20: 47011315-47026210 Glycine max
Glyma.20G238400 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47021211-47026210 Glycine max
Glyma.20G238400 10.0kb upstream 10.0kb upstream 19896 true Chr20: 47001315-47021210 Glycine max
Glyma.20G238400 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47001315-47011314 Glycine max
Glyma.20G238400 10.0kb downstream 10.0kb downstream 19896 true Chr20: 47011315-47031210 Glycine max
Glyma.20G238400 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47021211-47031210 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026551 5273 Angiosperm View MSA
122313709 5265 Fabidae View MSA
124065590 5270 Rosid View MSA
123741306 5271 Pentapetalae View MSA
122793057 5272 Eudicot View MSA
121296383 5274 Embryophyte View MSA
123334555 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.749 0.0 142.816 High  
cufflinks 19.4445 0.0 74.9814    
cufflinks 47.1626 0.0 212.972 High High
cufflinks 32.7736 0.0 127.252 High  
cufflinks 13.9882 0.0 50.7101    
cufflinks 8.31163 0.0 28.693   Low
cufflinks 28.2888 0.0 120.082 High  
cufflinks 17.9721 0.0 68.5746    
cufflinks 18.7573 0.0 72.2012    
cufflinks 2.717       Low
cufflinks 9.241     High  
cufflinks 8.399     High  
cufflinks 2.454       Low
cufflinks 2.335       Low
cufflinks 8.734     High  
cufflinks 7.913     High  
cufflinks 4.682        
cufflinks 7.096        
cufflinks 5.203        
cufflinks 11.723     High High
cufflinks 7.107     High  
cufflinks 9.997     High  
cufflinks 5.834        
cufflinks 10.29     High  
cufflinks 9.068     High  
cufflinks 6.116        

0 Strain