Gene : Glyma.20G238800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR22937:SF39 - E3 UBIQUITIN-PROTEIN LIGASE TOPORS-RELATED Genomic Order:  2388
Name:  ? Glyma.20G238800 Secondary Identifier:  ? PAC:30521569
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.20G238800 0.5kb upstream 0.5kb upstream 4539 true Chr20: 47048196-47052734 Glycine max
Glyma.20G238800 0.5kb upstream 0.5kb upstream 500 false Chr20: 47048196-47048695 Glycine max
Glyma.20G238800 0.5kb downstream 0.5kb downstream 4539 true Chr20: 47048696-47053234 Glycine max
Glyma.20G238800 0.5kb downstream 0.5kb downstream 500 false Chr20: 47052735-47053234 Glycine max
Glyma.20G238800 1.0kb upstream 1.0kb upstream 5039 true Chr20: 47047696-47052734 Glycine max
Glyma.20G238800 1.0kb upstream 1.0kb upstream 1000 false Chr20: 47047696-47048695 Glycine max
Glyma.20G238800 1.0kb downstream 1.0kb downstream 5039 true Chr20: 47048696-47053734 Glycine max
Glyma.20G238800 1.0kb downstream 1.0kb downstream 1000 false Chr20: 47052735-47053734 Glycine max
Glyma.20G238800 2.0kb upstream 2.0kb upstream 6039 true Chr20: 47046696-47052734 Glycine max
Glyma.20G238800 2.0kb upstream 2.0kb upstream 2000 false Chr20: 47046696-47048695 Glycine max
Glyma.20G238800 2.0kb downstream 2.0kb downstream 6039 true Chr20: 47048696-47054734 Glycine max
Glyma.20G238800 2.0kb downstream 2.0kb downstream 2000 false Chr20: 47052735-47054734 Glycine max
Glyma.20G238800 5.0kb upstream 5.0kb upstream 9039 true Chr20: 47043696-47052734 Glycine max
Glyma.20G238800 5.0kb upstream 5.0kb upstream 5000 false Chr20: 47043696-47048695 Glycine max
Glyma.20G238800 5.0kb downstream 5.0kb downstream 9039 true Chr20: 47048696-47057734 Glycine max
Glyma.20G238800 5.0kb downstream 5.0kb downstream 5000 false Chr20: 47052735-47057734 Glycine max
Glyma.20G238800 10.0kb upstream 10.0kb upstream 14039 true Chr20: 47038696-47052734 Glycine max
Glyma.20G238800 10.0kb upstream 10.0kb upstream 10000 false Chr20: 47038696-47048695 Glycine max
Glyma.20G238800 10.0kb downstream 10.0kb downstream 14039 true Chr20: 47048696-47062734 Glycine max
Glyma.20G238800 10.0kb downstream 10.0kb downstream 10000 false Chr20: 47052735-47062734 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300945 5265 Fabidae View MSA
124064836 5270 Rosid View MSA
123742446 5271 Pentapetalae View MSA
122794667 5272 Eudicot View MSA
122041615 5273 Angiosperm View MSA
121349825 5274 Embryophyte View MSA
123426689 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.44337 0.0 30.5342    
cufflinks 4.91478 0.0 21.9405   Low
cufflinks 7.64734 0.0 33.1136   High
cufflinks 5.95466 0.0 25.2487    
cufflinks 5.44217 0.0 22.6895    
cufflinks 6.4556 0.0 24.4147    
cufflinks 7.31088 0.0 30.0857    
cufflinks 5.59272 0.0 21.4791    
cufflinks 7.61376 0.0 32.1318   High
cufflinks 1.723       Low
cufflinks 4.779       High
cufflinks 2.953        
cufflinks 1.695       Low
cufflinks 1.804       Low
cufflinks 5.472     High High
cufflinks 2.081        
cufflinks 3.436        
cufflinks 2.897        
cufflinks 1.699       Low
cufflinks 2.347        
cufflinks 4.249       High
cufflinks 2.404        
cufflinks 2.076        
cufflinks 3.752        
cufflinks 2.096        
cufflinks 5.115       High

0 Strain