Gene : Glyma.U009600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22849:SF0 - WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  5
Name:  ? Glyma.U009600 Secondary Identifier:  ? PAC:30535341
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.U009600 0.5kb upstream 0.5kb upstream 2140 true scaffold_21: 74513-76652 Glycine max
Glyma.U009600 0.5kb upstream 0.5kb upstream 500 false scaffold_21: 74513-75012 Glycine max
Glyma.U009600 0.5kb downstream 0.5kb downstream 2140 true scaffold_21: 75013-77152 Glycine max
Glyma.U009600 0.5kb downstream 0.5kb downstream 500 false scaffold_21: 76653-77152 Glycine max
Glyma.U009600 1.0kb upstream 1.0kb upstream 2640 true scaffold_21: 74013-76652 Glycine max
Glyma.U009600 1.0kb upstream 1.0kb upstream 1000 false scaffold_21: 74013-75012 Glycine max
Glyma.U009600 1.0kb downstream 1.0kb downstream 2640 true scaffold_21: 75013-77652 Glycine max
Glyma.U009600 1.0kb downstream 1.0kb downstream 1000 false scaffold_21: 76653-77652 Glycine max
Glyma.U009600 2.0kb upstream 2.0kb upstream 3640 true scaffold_21: 73013-76652 Glycine max
Glyma.U009600 2.0kb upstream 2.0kb upstream 2000 false scaffold_21: 73013-75012 Glycine max
Glyma.U009600 2.0kb downstream 2.0kb downstream 3640 true scaffold_21: 75013-78652 Glycine max
Glyma.U009600 2.0kb downstream 2.0kb downstream 2000 false scaffold_21: 76653-78652 Glycine max
Glyma.U009600 5.0kb upstream 5.0kb upstream 6640 true scaffold_21: 70013-76652 Glycine max
Glyma.U009600 5.0kb upstream 5.0kb upstream 5000 false scaffold_21: 70013-75012 Glycine max
Glyma.U009600 5.0kb downstream 5.0kb downstream 6640 true scaffold_21: 75013-81652 Glycine max
Glyma.U009600 5.0kb downstream 5.0kb downstream 5000 false scaffold_21: 76653-81652 Glycine max
Glyma.U009600 10.0kb upstream 10.0kb upstream 11640 true scaffold_21: 65013-76652 Glycine max
Glyma.U009600 10.0kb upstream 10.0kb upstream 10000 false scaffold_21: 65013-75012 Glycine max
Glyma.U009600 10.0kb downstream 10.0kb downstream 11640 true scaffold_21: 75013-86652 Glycine max
Glyma.U009600 10.0kb downstream 10.0kb downstream 10000 false scaffold_21: 76653-86652 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310390 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.520289 0.0 1.92448    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0315764 0.0 0.132182 Low  
cufflinks 0.00685221 0.0 0.0329456 Low Low
cufflinks 0.963748 0.0 3.43338    
cufflinks 4.85372 0.0 14.2088   High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0122662 0.0 0.0555166 Low Low
cufflinks 0.559129 0.0 2.05789    
cufflinks 0.213        
cufflinks 9.347     High High
cufflinks 0.11     Low  
cufflinks 0.546        
cufflinks 0.037     Low  
cufflinks 0.777        
cufflinks 0.025     Low  
cufflinks 35.814     High High
cufflinks 0.055     Low  
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 8.27     High  
cufflinks 0.007     Low Low
cufflinks 0.023     Low  
cufflinks 12.361     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 40.4     High High

0 Strain